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The default output of HumanMethylation450 BeadChip compatible scanner systems consists of | |
* a SampleSheet.csv file and | |
* file directories named after the Chips Sentrix-ID containing two *.idat files per sample. | |
To use the files generated by the scanner system with ADMIRE, all file directories have to be compressed (e.g. by running `tar -zcvf compressFileName.tar.gz folderToCompress`). | |
ADMIRE can then be called with `admire -c SampleSheet.csv -z compressFileName.tar.gz` | |
*Hint*: ADMIRE can also read files ending on \*.tar.gz, \*.tgz or \*.tbz2. |