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Customized geneset locations for galaxy
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,14 +1,14 @@ | ||
| c1.all c1.all C1: Positional gene sets (by chromosome, 326) genesets/c1.all.v5.0.symbols.gmt | ||
| c2.cgp c2.cgp C2: Chemical and genetic pertubations (3395) genesets/c2.cpg.v5.0.symbols.gmt | ||
| c2.cp.biocarta c2.cp.biocarta C2: BioCharta canonical pathways (217) genesets/c2.cp.biocarta.v5.0.symbols.gmt | ||
| c2.cp.kegg c2.cp.kegg C2: KEGG gene sets (186) genesets/c2.cp.kegg.v5.0.symbols.gmt | ||
| c2.cp.reactome c2.cp.reactome C2: Reactome gene sets (674) genesets/c2.cp.reactome.v5.0.symbols.gmt | ||
| c3.tft c3.tft C3: transcription factor targets (615) genesets/c3.tft.v5.0.symbols.gmt | ||
| c4.cgn c4.cgn C4: Cancer gene neighborhoods (427) genesets/c4.cgn.v5.0.symbols.gmt | ||
| c4.cm c4.cm C4: Cancer modules (431) genesets/c4.cm.v5.0.symbols.gmt | ||
| c5.bp c5.bp C5: GO biological process (825) genesets/c5.bp.v5.0.symbols.gmt | ||
| c5.cc c5.cc C5: GO cellular component (233) genesets/c5.cc.v5.0.symbols.gmt | ||
| c5.mf c5.mf C5: GO molecular function (396) genesets/c5.mf.v5.0.symbols.gmt | ||
| c6 c6 C6: Oncogenic signatures (189) genesets/c6.all.v5.0.symbols.gmt | ||
| c7 c7 C7: Immunologic signatures (1910) genesets/c7.all.v5.0.symbols.gmt | ||
| h h H: Hallmark gene sets (50) genesets/h.all.v5.0.symbols.gmt | ||
| c1.all c1.all C1: Positional gene sets (by chromosome, 326) /home/mirna/galaxy-dist/tools/admire/genesets/c1.all.v5.0.symbols.gmt | ||
| c2.cgp c2.cgp C2: Chemical and genetic pertubations (3395) /home/mirna/galaxy-dist/tools/admire/genesets/c2.cpg.v5.0.symbols.gmt | ||
| c2.cp.biocarta c2.cp.biocarta C2: BioCharta canonical pathways (217) /home/mirna/galaxy-dist/tools/admire/genesets/c2.cp.biocarta.v5.0.symbols.gmt | ||
| c2.cp.kegg c2.cp.kegg C2: KEGG gene sets (186) /home/mirna/galaxy-dist/tools/admire/genesets/c2.cp.kegg.v5.0.symbols.gmt | ||
| c2.cp.reactome c2.cp.reactome C2: Reactome gene sets (674) /home/mirna/galaxy-dist/tools/admire/genesets/c2.cp.reactome.v5.0.symbols.gmt | ||
| c3.tft c3.tft C3: transcription factor targets (615) /home/mirna/galaxy-dist/tools/admire/genesets/c3.tft.v5.0.symbols.gmt | ||
| c4.cgn c4.cgn C4: Cancer gene neighborhoods (427) /home/mirna/galaxy-dist/tools/admire/genesets/c4.cgn.v5.0.symbols.gmt | ||
| c4.cm c4.cm C4: Cancer modules (431) /home/mirna/galaxy-dist/tools/admire/genesets/c4.cm.v5.0.symbols.gmt | ||
| c5.bp c5.bp C5: GO biological process (825) /home/mirna/galaxy-dist/tools/admire/genesets/c5.bp.v5.0.symbols.gmt | ||
| c5.cc c5.cc C5: GO cellular component (233) /home/mirna/galaxy-dist/tools/admire/genesets/c5.cc.v5.0.symbols.gmt | ||
| c5.mf c5.mf C5: GO molecular function (396) /home/mirna/galaxy-dist/tools/admire/genesets/c5.mf.v5.0.symbols.gmt | ||
| c6 c6 C6: Oncogenic signatures (189) /home/mirna/galaxy-dist/tools/admire/genesets/c6.all.v5.0.symbols.gmt | ||
| c7 c7 C7: Immunologic signatures (1910) /home/mirna/galaxy-dist/tools/admire/genesets/c7.all.v5.0.symbols.gmt | ||
| h h H: Hallmark gene sets (50) /home/mirna/galaxy-dist/tools/admire/genesets/h.all.v5.0.symbols.gmt |