get_best_motif.py

# parses arguments using argparse
# @return args list of all parameters
def parse_arguments():
    parser = argparse.ArgumentParser()
    parser.add_argument("meme", help="Path to meme file")
    parser.add_argument("output", help="")
    args = parser.parse_args()
    return args


def main():
    args = parse_arguments()
    out = open(args.output, "w+")
    with open(args.meme) as f:
        for line in f:
            if 'MOTIF  2' in line:
                break
            out.write(line)


if __name__ == "__main__":
    import argparse
    main()