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wd = ""
createTimeout = 40
params.threads=60 //Parameter for for scripts! Not for nextflow processes.
params.config="${wd}/config/uropa.config"
env {
path_bin = "${wd}/bin"
path_env = "${wd}/masterenv.yml"
}
includeConfig "${wd}/config/footprint_extraction.config"
includeConfig "${wd}/config/filter_motifs.config"
includeConfig "${wd}/config/cluster.config"
includeConfig "${wd}/config/motif_estimation.config"
includeConfig "${wd}/config/create_gtf.config"