Changed Paths

loosolab · Dec 4, 2018 · 1285f1a · 1285f1a
1 parent a53aa72
commit 1285f1a
Showing 1 changed file with 5 additions and 5 deletions.
diff --git a/bin/RegGTFExtractor.py b/bin/RegGTFExtractor.py
@@ -8,14 +8,14 @@
 import os
 
 
-def check_for_local_folder():
+def check_for_local_folder(wd):
 
-    if not os.path.isdir("./EnsemblData"):
+    if not os.path.isdir(os.path.join(wd, "/EnsemblData")):
 
-        os.mkdir("./EnsemblData")
+        os.mkdir(os.path.join(wd, "/EnsemblData"))
 
-    if not os.path.isdir( "./UCSCData" ):
-        os.mkdir( "./UCSCData" )
+    if not os.path.isdir(os.path.join(wd, "/UCSCData" )):
+        os.mkdir(os.path.join(wd, "/UCSCData" ))
 
 
 def main_script(org, wd, tissuetype=None):