get best motif from meme

bin/get_best_motif.py

@@ -0,0 +1,23 @@
+# parses arguments using argparse
+# @return args list of all parameters
+def parse_arguments():
+    parser = argparse.ArgumentParser()
+    parser.add_argument("meme", help="Path to meme file")
+    parser.add_argument("output", help="")
+    args = parser.parse_args()
+    return args
+
+
+def main():
+    args = parse_arguments()
+    out = open(args.output, "w+")
+    with open(args.meme) as f:
+        for line in f:
+            if 'MOTIF  2' in line:
+                break
+            out.write(line)
+
+
+if __name__ == "__main__":
+    import argparse
+    main()