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@renewiegandt
renewiegandt authored Dec 6, 2018
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Expand Up @@ -8,7 +8,14 @@ De novo motif discovery and evaluation based on footprints identified by TOBIAS
* [MEME-Suite](http://meme-suite.org/doc/install.html?man_type=web)

## Installation
Start with installing all dependencies listed above.
Start with installing all dependencies listed above. It is required to set the [enviroment paths for meme-suite](http://meme-suite.org/doc/install.html?man_type=web#installingtar).
this can be done with following commands:
```
export PATH=[meme-suite instalation path]/libexec/meme-[meme-suite version]:$PATH
export PATH=[meme-suite instalation path]/bin:$PATH
```


Download all files from the [GitHub repository](https://github.molgen.mpg.de/loosolab/masterJLU2018).
The Nextflow-script needs a conda enviroment to run. Nextflow can create the needed enviroment from the given yaml-file.
On some systems Nrxtflow exits the run with following error:
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