renamed ID field to gene_id in response to: #29

loosolab · Jan 3, 2019 · 39cdf16 · 39cdf16
1 parent f3b93f2
commit 39cdf16
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/bin/3.1_create_gtf/Modules/ucsc/ucsc.py b/bin/3.1_create_gtf/Modules/ucsc/ucsc.py
@@ -58,9 +58,9 @@ def find_ID(self, line):
         ref_id = re.search(pattern, line).group()
         splitted = ref_id.split(":")
         if len(splitted) == 2:
-            returnstring = str(splitted[0])+' "'+str(splitted[1])+'"'
+            returnstring = 'gene_id "'+str(splitted[1])+'"'
         else:
-            returnstring = 'ID '+'"NA"'
+            returnstring = 'gene_id "NA"'
 
         return returnstring