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fixed for correct contains_maxpos calculation
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JannikHamp authored Jan 10, 2019
1 parent b128196 commit 5343f60
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions bin/1.2_filter_motifs/compareBed_runinfo.R
Original file line number Diff line number Diff line change
Expand Up @@ -52,10 +52,10 @@ data_filtered[[7]] <- data_filtered[[3]] - data_filtered[[2]]

# adding column "contains_maxpos", containing flag (0 or 1)
# max_pos is the position of maximum score of a footprint
data_filtered[[8]] <- data_filtered[[8]] - data_filtered[[2]]
data_filtered[[8]] <- data_filtered[[8]] + data_filtered[[2]]
data_filtered <- cbind(data_filtered, contains_maxpos = 0)
data_filtered$contains_maxpos[intersect(which(data_filtered[[2]] <= data_filtered[[8]]), which(data_filtered[[3]] > data_filtered[[8]]))] = 1
data_filtered[[8]] <- data_filtered[[8]] + data_filtered[[2]]
data_filtered[[8]] <- data_filtered[[8]] - data_filtered[[2]]

fwrite(data_filtered, output, col.names=FALSE, quote = FALSE, sep = '\t')

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