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added complete info text
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renewiegandt committed Dec 15, 2018
1 parent c998452 commit a2f15b3
Showing 1 changed file with 16 additions and 3 deletions.
19 changes: 16 additions & 3 deletions pipeline.nf
Original file line number Diff line number Diff line change
Expand Up @@ -70,10 +70,10 @@ Required arguments:
--config Path to UROPA configuration file
--create_known_tfbs_path Path to directory where output from tfbsscan (known motifs) are stored.
Path can be set as tfbs_path in next run. (Default: './')
--out Output Directory (Default: './out/')
--out Output Directory (Default: './out/')
Optional arguments:
--help [0|1] 1 to show this help message. (Default: 0)
--tfbs_path Path to directory with output from tfbsscan. If given tfbsscan will not be run.
Expand Down Expand Up @@ -634,3 +634,16 @@ process filter {
"""
"""
} */

workflow.onComplete {
log.info"""
Pipeline execution summary
---------------------------
Completed at: ${workflow.complete}
Duration : ${workflow.duration}
Success : ${workflow.success}
workDir : ${workflow.workDir}
exit status : ${workflow.exitStatus}
Error report: ${workflow.errorReport ?: '-'}
"""
}

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