minor changes

loosolab · Dec 4, 2018 · afe9eb2 · afe9eb2
1 parent 0529318
commit afe9eb2
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Showing 2 changed files with 2 additions and 4 deletions.
diff --git a/nextflow.config b/nextflow.config
@@ -1,9 +1,5 @@
 createTimeout = 60
 
-params {
-
-}
-
 env {
 	path_bin = $workflow.projectDir/bin
 	path_env = $workflow.projectDir/masterenv.yml

diff --git a/pipeline.nf b/pipeline.nf
@@ -12,6 +12,8 @@ process footprint_extraction {
 	conda "${path_env}"
 
 	tag{name}
+	publishDir '${out}', mode: 'copy', pattern: '*.bed'
+	publishDir '/mnt/agnerds/Rene.Wiegandt/log', mode: 'copy', pattern: '*.log'
 
 	input:
 	set name, file (bigWig), file (bed) from footprint_in