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basti committed Dec 4, 2018
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# masterJLU2018

Tool for automaticly retrieving Regulatory Features based on [Ensembl Regulatory Build](http://www.ensembl.org/info/genome/funcgen/regulatory_build.html)
and [UCSC-Table-Browser](https://genome.ucsc.edu/cgi-bin/hgTables). Generating a GTF-File with Activity Data for a customisable number of tissue- and celltype categories.

## Usage

python3 ./RegGTFExtractor.py organism [--tissue]

- organism = Source organism (currently supported homo_sapiens and mus_musculus)
- --tissue[] = optional Parameter: List of Tissues based on ./config/celltypes_organism.json Filters the output by activity


## Dependencies

- Linux 64-bit
- Python3 or newer

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