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Commits on Apr 5, 2019

• Added TODO

  renewiegandt

  committedApr 5, 2019
  2e14753

Commits on Mar 28, 2019

• sorting gtf; bug fix; renaming gtf parameter

  renewiegandt

  committedMar 28, 2019
  bce6e1b

• Update: new parameters

  renewiegandt

  committedMar 28, 2019
  9b5cd47

• Renamed log file

  renewiegandt

  committedMar 28, 2019
  183483f

Commits on Mar 26, 2019

• Minor changes

  renewiegandt

  committedMar 26, 2019
  07d492c

• Minor changes

  renewiegandt

  committedMar 26, 2019
  5d9fb6c

• Added new parameters to config files

  renewiegandt

  committedMar 26, 2019
  f8c572b

• Update parameters in README

  renewiegandt

  committedMar 26, 2019
  89ae057

Commits on Mar 20, 2019

• Minor formating changes of output file

  renewiegandt

  committedMar 20, 2019
  cdc73a2

• Better output directory names

  renewiegandt

  committedMar 20, 2019
  fae46c6

• Added skript png_to_pdf

  renewiegandt

  committedMar 20, 2019
  c034878

Commits on Mar 4, 2019

• pipeline: Added seed for glam2

  renewiegandt

  committedMar 4, 2019
  f1eb5f1

• merge_similar_clusters: fixed filenames

  renewiegandt

  committedMar 4, 2019
  51dcfc0

• pipeline: added uropa summary to output

  renewiegandt

  committedMar 4, 2019
  a46476f

• merge_similar_clusters: bugfix; improved cluster plot

  renewiegandt

  committedMar 4, 2019
  e11e0af

Commits on Feb 11, 2019

• fixed label_cluster; minor changes

  renewiegandt

  committedFeb 11, 2019
  50ec488

• merge_similar_clusters.R: bugfix

  renewiegandt

  committedFeb 11, 2019
  9bf3ed9

• added parameter gap penalty to 2.2config

  renewiegandt

  committedFeb 11, 2019
  4c08eeb

• Fixed channel for venn; added conda meme-env

  renewiegandt

  committedFeb 11, 2019
  10a3df3

• Added meme_env parameter

  renewiegandt

  committedFeb 11, 2019
  011b99a

• Added yaml-file for meme-suite enviroment

  renewiegandt

  committedFeb 11, 2019
  1a95d4c

Commits on Feb 4, 2019

• Added uropa and venn process; mergeing gtf files; added parameter for second gtf file

  renewiegandt

  committedFeb 4, 2019
  3793c70

• Added uropa to the enviroment yaml

  renewiegandt

  committedFeb 4, 2019
  2186cc6

• Update uropa.config

  renewiegandt

  committedFeb 4, 2019
  98654e1

• Added venn.R to 3.2_evaluation

  renewiegandt

  committedFeb 4, 2019
  35d6f0c

Commits on Jan 28, 2019

• compareBed.sh: rename stats to log

  renewiegandt

  committedJan 28, 2019
  b931ea7

• pipeline.nf: changed output dir of logs

  renewiegandt

  committedJan 28, 2019
  e470bed

• Rename get_motif_seq.R

  renewiegandt

  committedJan 28, 2019
  565d4b8

• get_motif_seq.R: Removed redundant code

  renewiegandt

  committedJan 28, 2019
  170ca1e

Commits on Jan 23, 2019

• Removed debugging code

  renewiegandt

  committedJan 23, 2019
  e2494a0

• pipeline.nf: Added check for unknown parameters; update parameter names; if compareBed.sh is not executable chmod +x is called

  renewiegandt

  committedJan 23, 2019
  7e90339

• Update parameter names in moitif_estimation.config

  renewiegandt

  committedJan 23, 2019
  0f0aa58

• Update parameter names in footprint_extraction.config

  renewiegandt

  committedJan 23, 2019
  4bef518

• Update parameter names in create_gtf.config

  renewiegandt

  committedJan 23, 2019
  0f88bad

• Fixed error in demo run caused by wrong merging

  renewiegandt

  committedJan 23, 2019
  1c22a6a

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