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get_best_motif_seq.R returns error #77

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msbentsen opened this issue Jan 18, 2019 · 2 comments
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get_best_motif_seq.R returns error #77

msbentsen opened this issue Jan 18, 2019 · 2 comments
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@msbentsen
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msbentsen commented Jan 18, 2019

Output from nextflow run:


Command error:
  csplit: /mnt/workspace/mbentse/masterJLU2018/bin/2.2_motif_estimation/tmp/cluster_152/f_id_test.pholder00: No such file or directory
  sh: 1: cannot create /mnt/workspace/mbentse/masterJLU2018/bin/2.2_motif_estimation/tmp/cluster_152/*.pholder0[1-3].done: Directory nonexistent
  Error in names(datalist) <- paste0(c("Motif_", "Motif_", "Motif_"), seq(1,  :
    'names' attribute [3] must be the same length as the vector [0]
  Calls: create_seq_json
  Execution halted

@msbentsen msbentsen added the bug Something isn't working label Jan 18, 2019
@renewiegandt
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Could you provide the nextflow command?

@renewiegandt
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Fixed by #79.

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