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Motif estiamtion #12

Merged
merged 14 commits into from
Dec 20, 2018
Merged

Motif estiamtion #12

merged 14 commits into from
Dec 20, 2018

Commits on Dec 18, 2018

  1. Merge pull request #9 from loosolab/dev 

    Merge dev to motif_estimation to bring branch up to date
    @renewiegandt
    renewiegandt committed Dec 18, 2018
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  2. Bugfix in bed_to_fasta.R: Get last and second last instead of fixed i… 

    …ndices
    @renewiegandt
    renewiegandt committed Dec 18, 2018
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  3. bed_to_fasta.R: Improved documentation

    @renewiegandt
    renewiegandt committed Dec 18, 2018
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Commits on Dec 19, 2018

  1. bed_to_fasta.R: Imporved parametercalling with optparse

    @renewiegandt
    renewiegandt committed Dec 19, 2018
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  2. adaption of pipeline.nf to changes in bed_to_fasta.R

    @renewiegandt
    renewiegandt committed Dec 19, 2018
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  3. Refactoring

    @renewiegandt
    renewiegandt committed Dec 19, 2018
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  4. get_best_motif.py: fixed bug which caused to print motif header as la… 

    …st line + improved documentation
    @renewiegandt
    renewiegandt committed Dec 19, 2018
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  5. Fixed typos in get_best_motif.py

    @renewiegandt
    renewiegandt committed Dec 19, 2018
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  6. Reads BED-files with or without header

    @renewiegandt
    renewiegandt committed Dec 19, 2018
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Commits on Dec 20, 2018

  1. Imporved description for installation in README.md

    @renewiegandt
    renewiegandt committed Dec 20, 2018
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  2. Removed snakemake from yaml-file

    @renewiegandt
    renewiegandt committed Dec 20, 2018
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  3. Set parameter organism as required wihtout an default value

    @renewiegandt
    renewiegandt committed Dec 20, 2018
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  4. Added Parameter gtf_path. If path is set process create_gtf will be s… 

    …kipped
    @renewiegandt
    renewiegandt committed Dec 20, 2018
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  5. Fixed typo in bed_to_fasta.R

    @renewiegandt
    renewiegandt committed Dec 20, 2018
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