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renewiegandt merged 220 commits into from
Dec 19, 2018
Merged

Dev #13

renewiegandt merged 220 commits into from
Dec 19, 2018

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@renewiegandt renewiegandt commented Dec 19, 2018

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JannikHamp and others added 30 commits November 20, 2018 15:28
@JannikHamp
Add files via upload
16110f5
@JannikHamp
Add files via upload
a9d0070
@JannikHamp
Update README.md
26d2764
@JannikHamp
Update README.md
6fd9948
@JannikHamp
update, working with unmerged motif files now
2fdbf0d
@JannikHamp
update, bugfix output parameter error
9028820
@renewiegandt
Update README.md
21be98b
@renewiegandt
Update README.md
e265495
@renewiegandt
Update README.md
8345d59
@renewiegandt
added yaml file for conda enviroment
d8e6fc3
@renewiegandt
Update README.md
bdb0e83
@renewiegandt
Update README.md
4277a65
@renewiegandt
added nextflow configuration files
146b7f8
@renewiegandt
added parameter to config files
eb70872
@anastasiia
update config file
820d02f
@anastasiia
adding dependencies needed for call_peak.py
8a0143b
@renewiegandt
added enviroment parameter
a48bd8a
@renewiegandt
Merge branch 'dev' of https://github.molgen.mpg.de/loosolab/masterJLU…
c154116 
…2018 into dev
@anastasiia
Merge branch 'peak_calling' into dev
206043b
@anastasiia
Merge branch 'dev' of https://github.molgen.mpg.de/loosolab/masterJLU…
d0b72d8 
…2018 into dev
@renewiegandt
removed redundant parameter
8a369df
@renewiegandt
added conda; bed input
476df0c
@renewiegandt
added parameter to pipeline
a5259fd
@renewiegandt
Update README.md
43b5d98
@renewiegandt
Update README.md
3fd48cc
@anastasiia
delete unused logger statements
6ec4a85
@renewiegandt
overlap_with_known_TFBS: input/output changes
86f762c
@HendrikSchultheis
add bed sequence reduction script
f2344b6
@HendrikSchultheis
add cdhit wrapper script
ab88742
Inital commit ! -> Migration to new project
606485e
renewiegandt and others added 29 commits December 14, 2018 18:38
@renewiegandt
minor changes
1e3b771
@renewiegandt
Update README.md
fafe237
@renewiegandt
Update README.md
aed0e60
@renewiegandt
Update README.md
3ec6036
@renewiegandt
Update pipeline.nf
6f263b5
@renewiegandt
Update pipeline.nf
13d4447
@renewiegandt
Update README.md
565eeaa
@renewiegandt
Update pipeline.nf
43646c6
@renewiegandt
Update pipeline.nf
a390459
@renewiegandt
Merge branch 'master' into dev
1d86bc9
@renewiegandt
Merge pull request #5 from loosolab/dev
3a7ef0c 
Dev
@anastasiia
rename call_peaks to footrptins_extraction
4b2150c
@renewiegandt
Merge pull request #6 from loosolab/master
9a2d3eb 
master to dev
@renewiegandt
minor fixes
62add26
@renewiegandt
Merge pull request #7 from loosolab/dev
0f3f388 
Dev
@renewiegandt
Update README.md
6954ecd
@renewiegandt
Update README.md
6c42389
@renewiegandt
Update pipeline.nf
a159e41
@renewiegandt
added parameter help
550ad78
@renewiegandt
added separate motif_estimation script
1bb8521
@renewiegandt
Update pipeline.nf
76b07f9
@renewiegandt
Update README.md
e0ec81b
@renewiegandt
documentation
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@renewiegandt
Merge branch 'master' of https://github.molgen.mpg.de/loosolab/master…
c1f05e2 
…JLU2018
@renewiegandt
Changes output path for create_gtf
c998452
@renewiegandt
added complete info text
a2f15b3
@renewiegandt
bug fix
e330274
@renewiegandt
Merge pull request #8 from loosolab/master
2b99bb8 
merge master to dev
@JannikHamp
$workdir/merged.bed -> "$workdir"/merged.bed
e4256a9
@renewiegandt renewiegandt merged commit 4ec60f7 into peak_calling Dec 19, 2018
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@renewiegandt @JannikHamp @anastasiia @HendrikSchultheis @SebastianBeyvers