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Output
renewiegandt edited this page Dec 15, 2018
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The Pipeline creates different types of data. The data is sorted in Folders and Subfolders inside the output directory.
- ./out
- /cluster/
- /estimated_motifs/
- /clustered_motifs/
- /clustered_fasta/
- /unknown_motifs/
- /clustered_motifs/
- /final_estimated_motifs/
- /footprint_extraction/
- /log/
- /unknown_overlap/
- /gtf/
| Directory | Description |
|---|---|
| ./out/cluster/ | Contains Output from clustering. |
| ./out/estimated_motifs/unknown_motifs/ | Contains possible de novo motifs as MEME-files |
| ./out/estimated_motifs/clustered_motifs/ | Contains subfolder for each cluster, which contain the output from GLAM2 |
| ./out/estimated_motifs/clustered_motifs/clustered_fasta/ | Contains the FASTA-file for each cluster |
| ./out/final_estimated_motifs/ | Contains output from motif clustering, if activated |
| ./out/footprint_extraction/ | Contains output from footprint extraction |
| ./out/footprint_extraction/log/ | Contains the log-file from footprint extraction |
| /out/unknown_overlap/ | Contains the output from overlapping footprints with known motifs |
| /out/gtf/ | Contains from pipeline build gtf-file |