Fixed bug in family name switch parameter

loosolab · Jun 30, 2015 · b59210f · b59210f
1 parent 28d72ff
commit b59210f
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/mirpipe.pl b/mirpipe.pl
@@ -85,7 +85,7 @@
 $maxlen = '28' if (!defined $maxlen);
 $qval = '20' if (!defined $qval);
 $minlen = '18' if (!defined $minlen);
-$nameswitch = 'Yes' if (defined !$nameswitch);
+$nameswitch = 'Yes' if (!defined !$nameswitch);
 $abundance = '5' if (!defined $abundance);
 $tempfiles = 'No' if ($tempfiles eq "");
 
@@ -159,7 +159,7 @@
 ##############################################
 
 print  "Using as reads:\t$reads\nUsing as reference:\t$mirbase\nWill print logfile:\t$print_log\nWill include temporary files:\t$gzip_tempfiles\n";
-print "Additional parameters:\nmax mismatches:\t$mismatches\nmin counts:\t$mincount\nmin abundance:\t$abundance\n";
+print "Additional parameters:\nmax mismatches:\t$mismatches\nmin counts:\t$mincount\nmin abundance:\t$abundance\nfamily name switch:\t$nameswitch\n";
 print "Working on: $ENV{'PWD'}\n";
 
 ###############################################