plotOutput.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/plotting.R
\name{plotOutput}
\alias{plotOutput}
\title{Plot Output}
\usage{
plotOutput(expression, algorithmOutput, GenesToPlot = 100, name = "output")
}
\arguments{
\item{expression}{The gene expression data frame that shall be plotted}

\item{algorithmOutput}{The output of the algorithm}

\item{GenesToPlot}{The number of genes to be plotted}

\item{name}{The name of the plot without .pdf}
}
\value{
The plot name of the plot in the pdf file
}
\description{
Plots the output of algorithms with the right data format
with the (simulated) gene expression, creates a pdf file
}
\examples{
\dontrun{
params <- newParams(nGenes = list("1"=5,"2"=list("gauss"= 5,"gamma"= 5)))
simulation <- simulateExpression(params= params,verbose=FALSE)
expression <- simulation$expressionData
output <- useMclust(expression = expression, verbose = FALSE)
plotOutput(expression = expression,algorithmOutput = output,
GenesToPlot = 10,name = "plot10GenesWExpression")
plotOutput(expression = expression,algorithmOutput = output,
GenesToPlot = nrow(expression),name = "plotAllGenesWExpression")
}

}