cleanOutput.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/filter.R
\name{cleanOutput}
\alias{cleanOutput}
\title{cleanOutput
returns the cleaned output of algorithms}
\usage{
cleanOutput(cancerGroupOutput, cancerGroupExpressionmatrix,
  minPercentage = 10, coresToUse = 20, parallel = TRUE)
}
\arguments{
\item{cancerGroupOutput}{output of one cancer group}

\item{cancerGroupExpressionmatrix}{expression matrix of this one cancer group}

\item{minPercentage}{minimum percentage of groups.
Groups with lower percentages will be sorted into the other groups}

\item{coresToUse}{The number of cores to use for parallel computing}

\item{parallel}{logical. Whether cleanOutput should be computed in parallel}
}
\value{
cleaned output of algorithms
}
\description{
cleanOutput
returns the cleaned output of algorithms
}
\details{
This function cleans up the output as empty groups will be deleted,
genes with groups < minPercentage of the sum of patients are corrected and
modus, means, sds, group sizes and patients belonging to each group will be updated
}