createValidationData.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/simulation.R
\name{createValidationData}
\alias{createValidationData}
\title{Creating the validation data for algorithms.}
\usage{
createValidationData(params = newParams(), verbose = TRUE)
}
\arguments{
\item{params}{Params object containing simulation parameters for all scenarios.}

\item{verbose}{logical. Whether to print progress messages}
}
\value{
A data.frame with validation data, from which expression values will be simulated.
}
\description{
The validation data is generated by using the `Params` object and the parameters
that are stored in it. It is generated automatically when the
simulateExpression() function is executed
}
\details{
For changing the parameters, please consider the following:

Type shows with which type the slot has to be filled,
Usage shows further information for the usage of the values,
Default values describes the default values used to generate a `Params`
object.

Parameter      Type                            Default values

nGenes: list, Default value: list("1"= 700, "2" = list("gauss"=150,"gamma"=150)),
means: list, Default value: list("1"=c(2,4),"2" = c(2,4)),
foldChanges: list, Default value: list("1" = c(2,4),"2" = list("gauss"= c(2,4),"gamma" = c(3,5))),
sd: list, Default value: list("mu"= 0.61,"lambda"=2.21),
gamma: list, Default value: list("shape" = 2, "rate" = 2),
proportions: vector, Default value: c(10,20,30,40,50,60,70,80,90),
nPatients: numeric, Default value: 200,
seed: numeric, Default value: sample(1:1e6, 1)
}