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tobias_config: removed experiment specific columns
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@HendrikSchultheis
HendrikSchultheis committed Mar 21, 2019
1 parent b1f9438 commit d6c03ea
Showing 1 changed file with 0 additions and 357 deletions.
357 changes: 0 additions & 357 deletions inst/extdata/tobias_config.json
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@@ -1,12 +1,5 @@
{
"meta": [
{
"col_name": "id",
"level": "feature",
"type": "unique_id",
"label": "id",
"sublabel": ""
},
{
"col_name": "TFBS_chr",
"level": "feature",
Expand Down Expand Up @@ -140,146 +133,6 @@
"label": "name",
"sublabel": "gene"
},
{
"col_name": "2C_score",
"level": "condition",
"type": "score",
"label": "2C",
"sublabel": "score"
},
{
"col_name": "8C_score",
"level": "condition",
"type": "score",
"label": "8C",
"sublabel": "score"
},
{
"col_name": "ICM_score",
"level": "condition",
"type": "score",
"label": "ICM",
"sublabel": "score"
},
{
"col_name": "naive_hESC_score",
"level": "condition",
"type": "score",
"label": "naive hESC",
"sublabel": "score"
},
{
"col_name": "hESC_score",
"level": "condition",
"type": "score",
"label": "hESC",
"sublabel": "score"
},
{
"col_name": "2C_bound",
"level": "condition",
"type": "score",
"label": "2C",
"sublabel": "bound"
},
{
"col_name": "8C_bound",
"level": "condition",
"type": "score",
"label": "8C",
"sublabel": "bound"
},
{
"col_name": "ICM_bound",
"level": "condition",
"type": "score",
"label": "ICM",
"sublabel": "bound"
},
{
"col_name": "naive_hESC_bound",
"level": "condition",
"type": "score",
"label": "naive hESC",
"sublabel": "bound"
},
{
"col_name": "hESC_bound",
"level": "condition",
"type": "score",
"label": "hESC",
"sublabel": "bound"
},
{
"col_name": "2C_8C_log2fc",
"level": "contrast",
"type": "ratio",
"label": "2C|8C",
"sublabel": "log2fc"
},
{
"col_name": "2C_ICM_log2fc",
"level": "contrast",
"type": "ratio",
"label": "2C|ICM",
"sublabel": "log2fc"
},
{
"col_name": "2C_naive_hESC_log2fc",
"level": "contrast",
"type": "ratio",
"label": "2C|naive hESC",
"sublabel": "log2fc"
},
{
"col_name": "2C_hESC_log2fc",
"level": "contrast",
"type": "ratio",
"label": "2C|hESC",
"sublabel": "log2fc"
},
{
"col_name": "8C_ICM_log2fc",
"level": "contrast",
"type": "ratio",
"label": "8C|ICM",
"sublabel": "log2fc"
},
{
"col_name": "8C_naive_hESC_log2fc",
"level": "contrast",
"type": "ratio",
"label": "8C|naive hESC",
"sublabel": "log2fc"
},
{
"col_name": "8C_hESC_log2fc",
"level": "contrast",
"type": "ratio",
"label": "8C|hESC",
"sublabel": "log2fc"
},
{
"col_name": "ICM_naive_hESC_log2fc",
"level": "contrast",
"type": "ratio",
"label": "ICM|naive hESC",
"sublabel": "log2fc"
},
{
"col_name": "ICM_hESC_log2fc",
"level": "contrast",
"type": "ratio",
"label": "ICM|hESC",
"sublabel": "log2fc"
},
{
"col_name": "naive_hESC_hESC_log2fc",
"level": "contrast",
"type": "ratio",
"label": "naive hESC|hESC",
"sublabel": "log2fc"
},
// overview columns
{
"col_name": "TF_name",
Expand All @@ -301,216 +154,6 @@
"type": "category",
"label": "total TFBS",
"sublabel": ""
},
{
"col_name": "2C_mean_score",
"level": "condition",
"type": "score",
"label": "2C",
"sublabel": "mean"
},
{
"col_name": "2C_bound",
"level": "condition",
"type": "score",
"label": "2C",
"sublabel": "bound"
},
{
"col_name": "8C_mean_score",
"level": "condition",
"type": "score",
"label": "8C",
"sublabel": "mean"
},
{
"col_name": "8C_bound",
"level": "condition",
"type": "score",
"label": "8C",
"sublabel": "bound"
},
{
"col_name": "ICM_mean_score",
"level": "condition",
"type": "score",
"label": "ICM",
"sublabel": "mean"
},
{
"col_name": "ICM_bound",
"level": "condition",
"type": "score",
"label": "ICM",
"sublabel": "bound"
},
{
"col_name": "naive_hESC_mean_score",
"level": "condition",
"type": "score",
"label": "naive_hESC",
"sublabel": "mean"
},
{
"col_name": "naive_hESC_bound",
"level": "condition",
"type": "score",
"label": "naive_hESC",
"sublabel": "bound"
},
{
"col_name": "hESC_mean_score",
"level": "condition",
"type": "score",
"label": "hESC",
"sublabel": "mean"
},
{
"col_name": "hESC_bound",
"level": "condition",
"type": "score",
"label": "hESC",
"sublabel": "bound"
},
{
"col_name": "2C_8C_change",
"level": "contrast",
"type": "ratio",
"label": "2C|8C",
"sublabel": "change"
},
{
"col_name": "2C_8C_pvalue",
"level": "contrast",
"type": "probability",
"label": "2C|8C",
"sublabel": "p-value"
},
{
"col_name": "2C_ICM_change",
"level": "contrast",
"type": "ratio",
"label": "2C|ICM",
"sublabel": "change"
},
{
"col_name": "2C_ICM_pvalue",
"level": "contrast",
"type": "probability",
"label": "2C|ICM",
"sublabel": "p-value"
},
{
"col_name": "2C_naive_hESC_change",
"level": "contrast",
"type": "ratio",
"label": "2C|naive hESC",
"sublabel": "change"
},
{
"col_name": "2C_naive_hESC_pvalue",
"level": "contrast",
"type": "probability",
"label": "2C|naive hESC",
"sublabel": "p-value"
},
{
"col_name": "2C_hESC_change",
"level": "contrast",
"type": "ratio",
"label": "2C|hESC",
"sublabel": "change"
},
{
"col_name": "2C_hESC_pvalue",
"level": "contrast",
"type": "probability",
"label": "2C|hESC",
"sublabel": "p-value"
},
{
"col_name": "8C_ICM_change",
"level": "contrast",
"type": "ratio",
"label": "8C|ICM",
"sublabel": "change"
},
{
"col_name": "8C_ICM_pvalue",
"level": "contrast",
"type": "probability",
"label": "8C|ICM",
"sublabel": "p-value"
},
{
"col_name": "8C_naive_hESC_change",
"level": "contrast",
"type": "ratio",
"label": "8C|naive hESC",
"sublabel": "change"
},
{
"col_name": "8C_naive_hESC_pvalue",
"level": "contrast",
"type": "probability",
"label": "8C|naive hESC",
"sublabel": "p-value"
},
{
"col_name": "8C_hESC_change",
"level": "contrast",
"type": "ratio",
"label": "8C|hESC",
"sublabel": "change"
},
{
"col_name": "8C_hESC_pvalue",
"level": "contrast",
"type": "probability",
"label": "8C|hESC",
"sublabel": "p-value"
},
{
"col_name": "ICM_naive_hESC_change",
"level": "contrast",
"type": "ratio",
"label": "ICM|naive hESC",
"sublabel": "change"
},
{
"col_name": "ICM_naive_hESC_pvalue",
"level": "contrast",
"type": "probability",
"label": "ICM|naive hESC",
"sublabel": "p-value"
},
{
"col_name": "ICM_hESC_change",
"level": "contrast",
"type": "ratio",
"label": "ICM|hESC",
"sublabel": "change"
},
{
"col_name": "ICM_hESC_pvalue",
"level": "contrast",
"type": "probability",
"label": "ICM|hESC",
"sublabel": "p-value"
},
{
"col_name": "naive_hESC_hESC_change",
"level": "contrast",
"type": "ratio",
"label": "naive hESC|hESC",
"sublabel": "p-value"
},
{
"col_name": "naive_hESC_hESC_pvalue",
"level": "contrast",
"type": "probability",
"label": "naive hESC|hESC",
"sublabel": "change"
}
]
}

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