Buildkite

.Rbuildignore

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+^.*\.Rproj$
+^\.Rproj\.user$
+^\.buildkite.*

.buildkite/pipeline.yml

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+steps:
+  - label: "Build Conda-environment"
+    command:
+#      - "conda env create -f .buildkite/wilson-env.yml --force"
+      - ". /etc/profile.d/conda.sh"
+      - "conda activate wilson"
+#      - "Rscript -e 'install.packages(\"rje\")'"
+      - "Rscript -e 'devtools::check()'"
+
+#  - wait
+
+# - label: "Package check"
+#    command:

.buildkite/wilson-env.yml

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+name: wilson
+channels:
+  - defaults
+  - conda-forge
+  - bioconda
+dependencies:
+  - r-base
+  - r-shiny
+  - r-data.table
+  - r-ggplot2
+  - r-plotly
+  - r-scales
+  - r-shinydashboard
+  - "r-dt>=0.3"
+  - r-colourpicker
+  - r-RColorBrewer
+  - r-shinyjs
+  - r-viridis
+#  - r-rje
+#  - r-grdevices # base package
+#  - r-grid # base package
+  - r-plyr
+  - r-circlize
+  - bioconductor-complexheatmap
+#  - r-stats # base package
+  - r-gplots
+  - r-reshape
+  - r-rintrojs
+  - r-webshot
+  - r-rjsonio
+  - "r-ggrepel>=0.6.12"
+  - bioconductor-deseq2
+  - r-rjson
+  - r-factominer
+  - r-factoextra
+  - "r-heatmaply>=0.14.1"
+  - r-shinythemes
+  - r-shinycssloaders
+  - r-log4r
+  - r-openssl
+#  - r-methods # base package
+  - r-r6
+  - r-devtools
+  - "readline==6.3"
+  - r-roxygen2
+  - r-shinybs