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Clarion object #21

Merged
merged 80 commits into from
Jun 29, 2018
Merged

Clarion object #21

merged 80 commits into from
Jun 29, 2018

Commits on May 4, 2018

  1. R6 import added

    @HendrikSchultheis
    HendrikSchultheis committed May 4, 2018
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Commits on May 7, 2018

  1. implemented Clarion class

    @HendrikSchultheis
    HendrikSchultheis committed May 7, 2018
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  2. parser: return clarion object

    @HendrikSchultheis
    HendrikSchultheis committed May 7, 2018
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  3. parser: no header = NULL (not empty named list)

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    HendrikSchultheis committed May 7, 2018
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  4. clarion: added is_delimited function

    @HendrikSchultheis
    HendrikSchultheis committed May 7, 2018
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  5. parser: updated documentation

    @HendrikSchultheis
    HendrikSchultheis committed May 7, 2018
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  6. featureSelector: use clarion object

    @HendrikSchultheis
    HendrikSchultheis committed May 7, 2018
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Commits on May 8, 2018

  1. clarion: get_factors function added

    @HendrikSchultheis
    HendrikSchultheis committed May 8, 2018
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  2. geneView: integrated clarion object; choose grouping factor

    @HendrikSchultheis
    HendrikSchultheis committed May 8, 2018
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Commits on May 9, 2018

  1. geneview: fixed wrong if

    @HendrikSchultheis
    HendrikSchultheis committed May 9, 2018
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  2. geneview_example: added factors

    @HendrikSchultheis
    HendrikSchultheis committed May 9, 2018
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  3. columnSelector: fixed sub_label used as label if no label provided

    @HendrikSchultheis
    HendrikSchultheis committed May 9, 2018
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  4. global_cor_heatmap: use clarion object

    @HendrikSchultheis
    HendrikSchultheis committed May 9, 2018
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  5. heatmap: use clarion object

    @HendrikSchultheis
    HendrikSchultheis committed May 9, 2018
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Commits on May 14, 2018

  1. pca: use clarion object

    @HendrikSchultheis
    HendrikSchultheis committed May 14, 2018
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  2. marker: use clarion object

    @HendrikSchultheis
    HendrikSchultheis committed May 14, 2018
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Commits on May 15, 2018

  1. marker_example: added missing source

    @HendrikSchultheis
    HendrikSchultheis committed May 15, 2018
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Commits on May 16, 2018

  1. marker: return list of reactives for better performance

    @HendrikSchultheis
    HendrikSchultheis committed May 16, 2018
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  2. scatterplot: use clarion object

    @HendrikSchultheis
    HendrikSchultheis committed May 16, 2018
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  3. clarion: also coerce name to character

    @HendrikSchultheis
    HendrikSchultheis committed May 16, 2018
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Commits on May 17, 2018

  1. scatterplot: add names to hovertext

    @HendrikSchultheis
    HendrikSchultheis committed May 17, 2018
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Commits on May 22, 2018

  1. pca: color and shape based grouping enabled

    @HendrikSchultheis
    HendrikSchultheis committed May 22, 2018
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Commits on May 24, 2018

  1. added missing session$ns() to notifications

    @HendrikSchultheis
    HendrikSchultheis committed May 24, 2018
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Commits on May 29, 2018

  1. Merge branch 'master' into oo_clarion 

    # Conflicts:
#	R/geneView.R
#	R/pca.R
    @HendrikSchultheis
    HendrikSchultheis committed May 29, 2018
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Commits on May 30, 2018

  1. param grouping deprecated

    @HendrikSchultheis
    HendrikSchultheis committed May 30, 2018
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Commits on Jun 4, 2018

  1. Merge branch 'master' into oo_clarion

    @HendrikSchultheis
    HendrikSchultheis committed Jun 4, 2018
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  2. clarion: accept factor names e.g. factor1="name"

    @HendrikSchultheis
    HendrikSchultheis committed Jun 4, 2018
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  3. geneview, pca: updated to use factor names

    @HendrikSchultheis
    HendrikSchultheis committed Jun 4, 2018
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Commits on Jun 18, 2018

  1. Merge branch 'master' into oo_clarion 

    # Conflicts:
#	R/function.R
    @HendrikSchultheis
    HendrikSchultheis committed Jun 18, 2018
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  2. closeButton for all notifications

    @HendrikSchultheis
    HendrikSchultheis committed Jun 18, 2018
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  3. added function docu

    @HendrikSchultheis
    HendrikSchultheis committed Jun 18, 2018
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  4. clarion: enhanced docu; fixed examples

    @HendrikSchultheis
    HendrikSchultheis committed Jun 18, 2018
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Commits on Jun 19, 2018

  1. satisfy R cmd check by using SE approaches for ggplot related variabl… 

    …es and utils::globalVariables() in terms of data.table
    @HendrikSchultheis
    HendrikSchultheis committed Jun 19, 2018
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  2. satisfy R cmd check by using SE approaches for ggplot related variabl… 

    …es and utils::globalVariables() in terms of data.table
    @HendrikSchultheis
    HendrikSchultheis committed Jun 19, 2018
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  3. Merge branch 'oo_clarion' of https://github.molgen.mpg.de/HendrikSchu… 

    …ltheis/wilson into oo_clarion

# Conflicts:
#	R/zzz.R
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    HendrikSchultheis committed Jun 19, 2018
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Commits on Jun 20, 2018

  1. geneview: violin plot warning

    @HendrikSchultheis
    HendrikSchultheis committed Jun 20, 2018
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  2. replaced colorPicker with colorPicker2

    @HendrikSchultheis
    HendrikSchultheis committed Jun 20, 2018
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  3. bump package version to v2.0.0

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    HendrikSchultheis committed Jun 20, 2018
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Commits on Jun 21, 2018

  1. clarion$is_delimited: fixed wrong return

    @HendrikSchultheis
    HendrikSchultheis committed Jun 21, 2018
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  2. featureSelector: updated docu

    @HendrikSchultheis
    HendrikSchultheis committed Jun 21, 2018
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  3. geneView: changed guide

    @HendrikSchultheis
    HendrikSchultheis committed Jun 21, 2018
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  4. featureSelector: fixed filter crash on data column not defined in met… 

    …adata
    @HendrikSchultheis
    HendrikSchultheis committed Jun 21, 2018
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  5. clarion: omit not defined columns from data

    @HendrikSchultheis
    HendrikSchultheis committed Jun 21, 2018
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Commits on Jun 25, 2018

  1. fixed notes (win-builder): package name in title, software not in '',… 

    … spelling errors
    @HendrikSchultheis
    HendrikSchultheis committed Jun 25, 2018
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  2. fixed spelling errors

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    HendrikSchultheis committed Jun 25, 2018
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Commits on Jun 27, 2018

  1. Merge branch 'master' into oo_clarion

    @HendrikSchultheis
    HendrikSchultheis committed Jun 27, 2018
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  2. removed shinybs

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    HendrikSchultheis committed Jun 27, 2018
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  3. add reverse dependency checks

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    HendrikSchultheis committed Jun 27, 2018
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Commits on Jun 28, 2018

  1. lint and

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    HendrikSchultheis committed Jun 28, 2018
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  2. lint clarion

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    HendrikSchultheis committed Jun 28, 2018
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  3. lint colorPicker

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
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  4. lint columnSelector + example

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    HendrikSchultheis committed Jun 28, 2018
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  5. lint clarion

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    HendrikSchultheis committed Jun 28, 2018
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  6. lint featureSelector

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    HendrikSchultheis committed Jun 28, 2018
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  7. featureSelector: fixed wrong download var

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    HendrikSchultheis committed Jun 28, 2018
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  8. lint function

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    HendrikSchultheis committed Jun 28, 2018
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  9. lint geneView

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    HendrikSchultheis committed Jun 28, 2018
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  10. lint global

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    HendrikSchultheis committed Jun 28, 2018
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  11. lint geneView

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    HendrikSchultheis committed Jun 28, 2018
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  12. lint global_cor_heatmap

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    HendrikSchultheis committed Jun 28, 2018
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  13. lint heatmap

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    HendrikSchultheis committed Jun 28, 2018
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  14. lint heatmap

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    HendrikSchultheis committed Jun 28, 2018
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  15. lint label

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    HendrikSchultheis committed Jun 28, 2018
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  16. lint limit

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    HendrikSchultheis committed Jun 28, 2018
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  17. lint marker + example

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    HendrikSchultheis committed Jun 28, 2018
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  18. lint orNumeric + example

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    HendrikSchultheis committed Jun 28, 2018
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  19. lint orTextual + example

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    HendrikSchultheis committed Jun 28, 2018
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  20. lint orNumeric

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    HendrikSchultheis committed Jun 28, 2018
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  21. lint parser

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    HendrikSchultheis committed Jun 28, 2018
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  22. lint pca

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    HendrikSchultheis committed Jun 28, 2018
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  23. lint scatterPlot + example

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    HendrikSchultheis committed Jun 28, 2018
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  24. lint transformation

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    HendrikSchultheis committed Jun 28, 2018
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  25. download: restore wd on exit

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    HendrikSchultheis committed Jun 28, 2018
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  26. and, featureSelector, function: use less error prone seq_len() instea… 

    …d of 1:x
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    HendrikSchultheis committed Jun 28, 2018
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  27. T -> TRUE; F -> FALSE

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    HendrikSchultheis committed Jun 28, 2018
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  28. deleted unused imports

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    HendrikSchultheis committed Jun 28, 2018
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Commits on Jun 29, 2018

  1. replaced sapply with type safe v- /lapply

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    HendrikSchultheis committed Jun 29, 2018
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  2. columnSelector: fixed typo

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    HendrikSchultheis committed Jun 29, 2018
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  3. update revdep_check

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    HendrikSchultheis committed Jun 29, 2018
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  4. DESCRIPTION: changed title to title case

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    HendrikSchultheis committed Jun 29, 2018
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