Skip to content
This repository has been archived by the owner. It is now read-only.

Clarion object #21

Merged
merged 80 commits into from Jun 29, 2018
Merged

Clarion object #21

merged 80 commits into from Jun 29, 2018

Commits on May 4, 2018

  1. R6 import added

    @HendrikSchultheis
    HendrikSchultheis committed May 4, 2018
    Copy the full SHA
    d0cb7f0 View commit details
    Browse the repository at this point in the history

Commits on May 7, 2018

  1. implemented Clarion class

    @HendrikSchultheis
    HendrikSchultheis committed May 7, 2018
    Copy the full SHA
    b259f97 View commit details
    Browse the repository at this point in the history

  2. parser: return clarion object

    @HendrikSchultheis
    HendrikSchultheis committed May 7, 2018
    Copy the full SHA
    693dcd4 View commit details
    Browse the repository at this point in the history

  3. parser: no header = NULL (not empty named list)

    @HendrikSchultheis
    HendrikSchultheis committed May 7, 2018
    Copy the full SHA
    4158652 View commit details
    Browse the repository at this point in the history

  4. clarion: added is_delimited function

    @HendrikSchultheis
    HendrikSchultheis committed May 7, 2018
    Copy the full SHA
    beb67a2 View commit details
    Browse the repository at this point in the history

  5. parser: updated documentation

    @HendrikSchultheis
    HendrikSchultheis committed May 7, 2018
    Copy the full SHA
    8849cd7 View commit details
    Browse the repository at this point in the history

  6. featureSelector: use clarion object

    @HendrikSchultheis
    HendrikSchultheis committed May 7, 2018
    Copy the full SHA
    70bfa60 View commit details
    Browse the repository at this point in the history

Commits on May 8, 2018

  1. clarion: get_factors function added

    @HendrikSchultheis
    HendrikSchultheis committed May 8, 2018
    Copy the full SHA
    9d164fb View commit details
    Browse the repository at this point in the history

  2. geneView: integrated clarion object; choose grouping factor

    @HendrikSchultheis
    HendrikSchultheis committed May 8, 2018
    Copy the full SHA
    d54d9ad View commit details
    Browse the repository at this point in the history

Commits on May 9, 2018

  1. geneview: fixed wrong if

    @HendrikSchultheis
    HendrikSchultheis committed May 9, 2018
    Copy the full SHA
    0331d8b View commit details
    Browse the repository at this point in the history

  2. geneview_example: added factors

    @HendrikSchultheis
    HendrikSchultheis committed May 9, 2018
    Copy the full SHA
    a72e328 View commit details
    Browse the repository at this point in the history

  3. columnSelector: fixed sub_label used as label if no label provided

    @HendrikSchultheis
    HendrikSchultheis committed May 9, 2018
    Copy the full SHA
    7fd4753 View commit details
    Browse the repository at this point in the history

  4. global_cor_heatmap: use clarion object

    @HendrikSchultheis
    HendrikSchultheis committed May 9, 2018
    Copy the full SHA
    b5ab180 View commit details
    Browse the repository at this point in the history

  5. heatmap: use clarion object

    @HendrikSchultheis
    HendrikSchultheis committed May 9, 2018
    Copy the full SHA
    776aeb9 View commit details
    Browse the repository at this point in the history

Commits on May 14, 2018

  1. pca: use clarion object

    @HendrikSchultheis
    HendrikSchultheis committed May 14, 2018
    Copy the full SHA
    d7ef909 View commit details
    Browse the repository at this point in the history

  2. marker: use clarion object

    @HendrikSchultheis
    HendrikSchultheis committed May 14, 2018
    Copy the full SHA
    9e82e82 View commit details
    Browse the repository at this point in the history

Commits on May 15, 2018

  1. marker_example: added missing source

    @HendrikSchultheis
    HendrikSchultheis committed May 15, 2018
    Copy the full SHA
    fec6cd5 View commit details
    Browse the repository at this point in the history

Commits on May 16, 2018

  1. marker: return list of reactives for better performance

    @HendrikSchultheis
    HendrikSchultheis committed May 16, 2018
    Copy the full SHA
    70a17c3 View commit details
    Browse the repository at this point in the history

  2. scatterplot: use clarion object

    @HendrikSchultheis
    HendrikSchultheis committed May 16, 2018
    Copy the full SHA
    af8d392 View commit details
    Browse the repository at this point in the history

  3. clarion: also coerce name to character

    @HendrikSchultheis
    HendrikSchultheis committed May 16, 2018
    Copy the full SHA
    d4b5240 View commit details
    Browse the repository at this point in the history

Commits on May 17, 2018

  1. scatterplot: add names to hovertext

    @HendrikSchultheis
    HendrikSchultheis committed May 17, 2018
    Copy the full SHA
    80deb83 View commit details
    Browse the repository at this point in the history

Commits on May 22, 2018

  1. pca: color and shape based grouping enabled

    @HendrikSchultheis
    HendrikSchultheis committed May 22, 2018
    Copy the full SHA
    95eb6eb View commit details
    Browse the repository at this point in the history

Commits on May 24, 2018

  1. added missing session$ns() to notifications

    @HendrikSchultheis
    HendrikSchultheis committed May 24, 2018
    Copy the full SHA
    0e12c11 View commit details
    Browse the repository at this point in the history

Commits on May 29, 2018

  1. Merge branch 'master' into oo_clarion 

    # Conflicts:
#	R/geneView.R
#	R/pca.R
    @HendrikSchultheis
    HendrikSchultheis committed May 29, 2018
    Copy the full SHA
    352c47b View commit details
    Browse the repository at this point in the history

Commits on May 30, 2018

  1. param grouping deprecated

    @HendrikSchultheis
    HendrikSchultheis committed May 30, 2018
    Copy the full SHA
    0cb954d View commit details
    Browse the repository at this point in the history

Commits on Jun 4, 2018

  1. Merge branch 'master' into oo_clarion

    @HendrikSchultheis
    HendrikSchultheis committed Jun 4, 2018
    Copy the full SHA
    50cf78d View commit details
    Browse the repository at this point in the history

  2. clarion: accept factor names e.g. factor1="name"

    @HendrikSchultheis
    HendrikSchultheis committed Jun 4, 2018
    Copy the full SHA
    3252479 View commit details
    Browse the repository at this point in the history

  3. geneview, pca: updated to use factor names

    @HendrikSchultheis
    HendrikSchultheis committed Jun 4, 2018
    Copy the full SHA
    7faf263 View commit details
    Browse the repository at this point in the history

Commits on Jun 18, 2018

  1. Merge branch 'master' into oo_clarion 

    # Conflicts:
#	R/function.R
    @HendrikSchultheis
    HendrikSchultheis committed Jun 18, 2018
    Copy the full SHA
    7b92867 View commit details
    Browse the repository at this point in the history

  2. closeButton for all notifications

    @HendrikSchultheis
    HendrikSchultheis committed Jun 18, 2018
    Copy the full SHA
    ca2b1be View commit details
    Browse the repository at this point in the history

  3. added function docu

    @HendrikSchultheis
    HendrikSchultheis committed Jun 18, 2018
    Copy the full SHA
    5dcf4e2 View commit details
    Browse the repository at this point in the history

  4. clarion: enhanced docu; fixed examples

    @HendrikSchultheis
    HendrikSchultheis committed Jun 18, 2018
    Copy the full SHA
    e74a29d View commit details
    Browse the repository at this point in the history

Commits on Jun 19, 2018

  1. satisfy R cmd check by using SE approaches for ggplot related variabl… 

    …es and utils::globalVariables() in terms of data.table
    @HendrikSchultheis
    HendrikSchultheis committed Jun 19, 2018
    Copy the full SHA
    f401503 View commit details
    Browse the repository at this point in the history

  2. satisfy R cmd check by using SE approaches for ggplot related variabl… 

    …es and utils::globalVariables() in terms of data.table
    @HendrikSchultheis
    HendrikSchultheis committed Jun 19, 2018
    Copy the full SHA
    65d57a7 View commit details
    Browse the repository at this point in the history

  3. Merge branch 'oo_clarion' of https://github.molgen.mpg.de/HendrikSchu… 

    …ltheis/wilson into oo_clarion

# Conflicts:
#	R/zzz.R
    @HendrikSchultheis
    HendrikSchultheis committed Jun 19, 2018
    Copy the full SHA
    b0ac2d3 View commit details
    Browse the repository at this point in the history

Commits on Jun 20, 2018

  1. geneview: violin plot warning

    @HendrikSchultheis
    HendrikSchultheis committed Jun 20, 2018
    Copy the full SHA
    81f0d26 View commit details
    Browse the repository at this point in the history

  2. replaced colorPicker with colorPicker2

    @HendrikSchultheis
    HendrikSchultheis committed Jun 20, 2018
    Copy the full SHA
    d97b0de View commit details
    Browse the repository at this point in the history

  3. bump package version to v2.0.0

    @HendrikSchultheis
    HendrikSchultheis committed Jun 20, 2018
    Copy the full SHA
    1caf9e8 View commit details
    Browse the repository at this point in the history

Commits on Jun 21, 2018

  1. clarion$is_delimited: fixed wrong return

    @HendrikSchultheis
    HendrikSchultheis committed Jun 21, 2018
    Copy the full SHA
    b73286c View commit details
    Browse the repository at this point in the history

  2. featureSelector: updated docu

    @HendrikSchultheis
    HendrikSchultheis committed Jun 21, 2018
    Copy the full SHA
    0eb9c60 View commit details
    Browse the repository at this point in the history

  3. geneView: changed guide

    @HendrikSchultheis
    HendrikSchultheis committed Jun 21, 2018
    Copy the full SHA
    7f26cc4 View commit details
    Browse the repository at this point in the history

  4. featureSelector: fixed filter crash on data column not defined in met… 

    …adata
    @HendrikSchultheis
    HendrikSchultheis committed Jun 21, 2018
    Copy the full SHA
    ce951d3 View commit details
    Browse the repository at this point in the history

  5. clarion: omit not defined columns from data

    @HendrikSchultheis
    HendrikSchultheis committed Jun 21, 2018
    Copy the full SHA
    7db391a View commit details
    Browse the repository at this point in the history

Commits on Jun 25, 2018

  1. fixed notes (win-builder): package name in title, software not in '',… 

    … spelling errors
    @HendrikSchultheis
    HendrikSchultheis committed Jun 25, 2018
    Copy the full SHA
    67bb182 View commit details
    Browse the repository at this point in the history

  2. fixed spelling errors

    @HendrikSchultheis
    HendrikSchultheis committed Jun 25, 2018
    Copy the full SHA
    915080a View commit details
    Browse the repository at this point in the history

Commits on Jun 27, 2018

  1. Merge branch 'master' into oo_clarion

    @HendrikSchultheis
    HendrikSchultheis committed Jun 27, 2018
    Copy the full SHA
    b84be79 View commit details
    Browse the repository at this point in the history

  2. removed shinybs

    @HendrikSchultheis
    HendrikSchultheis committed Jun 27, 2018
    Copy the full SHA
    84f492e View commit details
    Browse the repository at this point in the history

  3. add reverse dependency checks

    @HendrikSchultheis
    HendrikSchultheis committed Jun 27, 2018
    Copy the full SHA
    7422194 View commit details
    Browse the repository at this point in the history

Commits on Jun 28, 2018

  1. lint and

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    53ab467 View commit details
    Browse the repository at this point in the history

  2. lint clarion

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    2524e04 View commit details
    Browse the repository at this point in the history

  3. lint colorPicker

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    1c3ca98 View commit details
    Browse the repository at this point in the history

  4. lint columnSelector + example

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    9656bbd View commit details
    Browse the repository at this point in the history

  5. lint clarion

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    b8334d5 View commit details
    Browse the repository at this point in the history

  6. lint featureSelector

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    4de0a38 View commit details
    Browse the repository at this point in the history

  7. featureSelector: fixed wrong download var

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    7557b04 View commit details
    Browse the repository at this point in the history

  8. lint function

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    4c64391 View commit details
    Browse the repository at this point in the history

  9. lint geneView

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    8d6cb76 View commit details
    Browse the repository at this point in the history

  10. lint global

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    bd79fb8 View commit details
    Browse the repository at this point in the history

  11. lint geneView

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    0adf557 View commit details
    Browse the repository at this point in the history

  12. lint global_cor_heatmap

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    f0abc10 View commit details
    Browse the repository at this point in the history

  13. lint heatmap

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    e662c44 View commit details
    Browse the repository at this point in the history

  14. lint heatmap

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    9e5be22 View commit details
    Browse the repository at this point in the history

  15. lint label

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    9472f23 View commit details
    Browse the repository at this point in the history

  16. lint limit

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    23900e9 View commit details
    Browse the repository at this point in the history

  17. lint marker + example

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    709e387 View commit details
    Browse the repository at this point in the history

  18. lint orNumeric + example

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    4ac08ad View commit details
    Browse the repository at this point in the history

  19. lint orTextual + example

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    7c6547f View commit details
    Browse the repository at this point in the history

  20. lint orNumeric

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    527e928 View commit details
    Browse the repository at this point in the history

  21. lint parser

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    a5468a1 View commit details
    Browse the repository at this point in the history

  22. lint pca

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    45d0808 View commit details
    Browse the repository at this point in the history

  23. lint scatterPlot + example

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    b6e4302 View commit details
    Browse the repository at this point in the history

  24. lint transformation

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    f938bad View commit details
    Browse the repository at this point in the history

  25. download: restore wd on exit

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    8d41dfd View commit details
    Browse the repository at this point in the history

  26. and, featureSelector, function: use less error prone seq_len() instea… 

    …d of 1:x
    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    63f5ed9 View commit details
    Browse the repository at this point in the history

  27. T -> TRUE; F -> FALSE

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    117e0c4 View commit details
    Browse the repository at this point in the history

  28. deleted unused imports

    @HendrikSchultheis
    HendrikSchultheis committed Jun 28, 2018
    Copy the full SHA
    45de92b View commit details
    Browse the repository at this point in the history

Commits on Jun 29, 2018

  1. replaced sapply with type safe v- /lapply

    @HendrikSchultheis
    HendrikSchultheis committed Jun 29, 2018
    Copy the full SHA
    ad9573a View commit details
    Browse the repository at this point in the history

  2. columnSelector: fixed typo

    @HendrikSchultheis
    HendrikSchultheis committed Jun 29, 2018
    Copy the full SHA
    670b26f View commit details
    Browse the repository at this point in the history

  3. update revdep_check

    @HendrikSchultheis
    HendrikSchultheis committed Jun 29, 2018
    Copy the full SHA
    5828ee9 View commit details
    Browse the repository at this point in the history

  4. DESCRIPTION: changed title to title case

    @HendrikSchultheis
    HendrikSchultheis committed Jun 29, 2018
    Copy the full SHA
    f35ee0a View commit details
    Browse the repository at this point in the history