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October 11, 2019 15:09
October 11, 2019 15:09
October 11, 2019 15:09
April 27, 2020 18:23
October 11, 2019 15:09
April 27, 2020 18:23
October 11, 2019 15:09
April 27, 2020 18:23
October 11, 2019 15:09
April 27, 2020 18:23
October 11, 2019 15:09
April 27, 2020 18:32
October 11, 2019 15:09
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#!/usr/bin/env beesh
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## this file was created by bee init and should be executed to build a
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## bee-package. (Additional hints are located at the end of this file.)
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###############################################################################
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## The source URL(s) define the location of the sources that will be
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## downloaded. Version variables may be used to simplify reuse of this bee-file.
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SRCURL[0]=""
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###############################################################################
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## Add URLs/pathes to patch files to the PATCHURL array.
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## The sources will be patched in the order of the array.
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# PATCHURL+=()
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###############################################################################
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## Add filename patterns to the EXCLUDE array of files that should not
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## be added to you package but may be present in the image directory.
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# EXCLUDE+=()
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###############################################################################
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## Uncomment the next statement, if the software may not be able to be built
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## outside the source directory and needs to be built inside the source
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## directory.
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# build_in_sourcedir
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###############################################################################
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## bee cannot detect buildtypes specified in subdirectories.
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## Sometimes packages "hide" the real sources in a subdirectory named
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## 'src' or 'cmake' or ..
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## use 'sourcesubdir_append' to specify this directory if known.
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# sourcesubdir_append src
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###############################################################################
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## Change the default (auto-detected) steps to
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## extract, patch, configure/setup, build and install the software.
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## Make sure the mee_install function does install everything to the
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## image directory "${D}"
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#mee_extract() {
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# bee_extract "${@}"
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#}
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#mee_patch() {
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# bee_patch "${@}"
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#}
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#mee_configure() {
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# bee_configure
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#}
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mee_build() {
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chmod +x wrapper
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}
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mee_install() {
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mkdir -p "$D$BINDIR"
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# list generated by
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# for cmd in $(cd /pkg/perl-5.12.1-0/bin;ls); do test -e /usr/bin/$cmd || echo $cmd;done | fmt -w 80| sed 's/.*/ & \\/'
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#
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for cmd in \
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a2p bdf2gdfont.pl bp_aacomp bp_biofetch_genbank_proxy bp_bioflat_index \
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bp_biogetseq bp_dbsplit bp_download_query_genbank bp_einfo \
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bp_extract_feature_seq bp_fastam9_to_table bp_fetch bp_filter_search \
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bp_find-blast-matches bp_flanks bp_gccalc bp_genbank2gff3 \
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bp_genbank_ref_extractor bp_index bp_local_taxonomydb_query \
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bp_make_mrna_protein bp_mask_by_search bp_mrtrans bp_mutate bp_nexus2nh \
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bp_nrdb bp_oligo_count bp_process_gadfly bp_process_sgd bp_query_entrez_taxa \
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bp_remote_blast.pl bp_revtrans-motif bp_search2alnblocks bp_search2gff \
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bp_search2table bp_search2tribe bp_seq_length bp_seqconvert bp_seqcut \
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bp_seqpart bp_seqret bp_seqretsplit bp_split_seq bp_sreformat bp_taxid4species \
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bp_taxonomy2tree bp_translate_seq bp_tree2pag bp_unflatten_seq c2ph \
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combig-script.sh combig.pl config_data corelist count.pl count2huge.pl cpan \
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cpan-mirrors cpan2dist cpanel_json_xs cpanp cpanp-run-perl crc32 db_archive \
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db_checkpoint db_deadlock db_dump db_hotbackup db_load db_printlog db_recover \
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db_sql db_stat db_upgrade db_verify dbilogstrip dbiprof dbiproxy dm_date \
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dm_zdump dprofpp enc2xs encguess extract_vba find-compounds.pl find2perl \
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findrule gedi h2ph h2xs htmltree huge-count.pl huge-delete.pl huge-merge.pl \
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huge-sort.pl huge-split.pl hypnotoad instmodsh json_pp json_xs kocos-script.sh \
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kocos.pl l4p-tmpl leo libnetcfg lwp-download lwp-dump lwp-mirror lwp-request \
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mech-dump mo-inline modemtest mojo moose-outdated morbo msgconvert net-server \
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odf2pod odf_set_fields odf_set_title odfbuild odfextract odffilesearch \
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odffindbasic odfhighlight odfmetadoc odfsearch oodoc_test oodoc_version \
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package-stash-conflicts pdl pdl2 pdldoc perl5.12.1 perlbug perlcritic perldl \
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perldoc perlivp perlsh perlthanks perltidy piconv pl2pm plackup pod2html \
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pod2latex pod2man pod2text pod2usage pod_cover podchecker podselect podspell \
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pptemplate prove psed pstruct ptar ptardiff ptargrep ptked ptksh puudecode \
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puuencode rank-script.sh rank.pl readline_usb s2p schwartzmon shasum \
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snmpkey splain stag-autoschema.pl stag-db.pl stag-diff.pl stag-drawtree.pl \
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stag-filter.pl stag-findsubtree.pl stag-flatten.pl stag-grep.pl stag-handle.pl \
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stag-itext2simple.pl stag-itext2sxpr.pl stag-itext2xml.pl stag-join.pl \
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stag-merge.pl stag-mogrify.pl stag-parse.pl stag-query.pl stag-splitter.pl \
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stag-view.pl stag-xml2itext.pl statistic.pl streamzip test-yaml text2odf \
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text2table tkjpeg tpage ttree ucalc use-devel-checklib widget xpath \
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xsubpp yamlpp5-events yamlpp5-highlight yamlpp5-load yamlpp5-load-dump \
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yamlpp5-parse-emit zipdetails \
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; do
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ln "$B/wrapper" "$D$BINDIR/$cmd"
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done
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mkdir -p "$D$PREFIX/local/bin"
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ln -s "$BINDIR/perl" "$D$PREFIX/local/bin/perl"
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}
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## by default this may be 'make install DESTDIR="${D}"'
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###############################################################################
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##
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## Additional hints:
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##
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## The name of this bee-file should follow the following naming convention:
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## pkgname-pkgversion-pkgrevision.bee
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##
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## You may remove all comments as long as SRCURL[0] is set.
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##
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## Everything in this file will be executed in a bash environment.
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##
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## Build the package by executing
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## './pkg-version-N.bee' or
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## 'beesh ./pkg-version-N.bee'
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##
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## see http://beezinga.org/
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##