Skip to content

Commit

Permalink
perl-wrapper: Use perl-5.12.1-0
Browse files Browse the repository at this point in the history
We want to take small steps. When we replace the perl installed into
/usr/local/ this time, we don't want to make an implicit upgrade but use
the package with the same perl version number instead.

Let the package wrpper use the package "perl-5.12.1-0" instead of "perl"
which is the recommended version.

Rebuild list of commands to supply in /usr/bin.
  • Loading branch information
donald committed Apr 27, 2020
1 parent ac53df8 commit 091d5a4
Showing 1 changed file with 32 additions and 38 deletions.
70 changes: 32 additions & 38 deletions perl-wrapper.be0
Original file line number Diff line number Diff line change
Expand Up @@ -58,58 +58,52 @@ SRCURL[0]=""
#}

mee_build() {
echo -e '#! /bin/bash\nprun perl $(basename "$0") "$@"' >wrapper
echo -e '#! /bin/bash\nprun perl-5.12.1-0 $(basename "$0") "$@"' >wrapper
chmod +x wrapper
}

mee_install() {
mkdir -p "$D$BINDIR"

# list generated by
# for cmd in $(cd /pkg/perl-5.28.1-0/bin;ls); do test -e /usr/bin/$cmd || echo $cmd;done | fmt -w 80| sed 's/.*/ & \\/'
# for cmd in $(cd /pkg/perl-5.12.1-0/bin;ls); do test -e /usr/bin/$cmd || echo $cmd;done | fmt -w 80| sed 's/.*/ & \\/'
#
for cmd in \
ansi2html bdf2gdfont.pl bp_aacomp.pl bp_biofetch_genbank_proxy.pl \
bp_bioflat_index.pl bp_biogetseq.pl bp_blast2tree.pl bp_bulk_load_gff.pl \
bp_chaos_plot.pl bp_classify_hits_kingdom.pl bp_composite_LD.pl \
bp_das_server.pl bp_dbsplit.pl bp_download_query_genbank.pl bp_einfo \
bp_extract_feature_seq.pl bp_fast_load_gff.pl bp_fastam9_to_table.pl \
bp_fetch.pl bp_filter_search.pl bp_find-blast-matches.pl bp_flanks.pl \
bp_gccalc.pl bp_genbank2gff.pl bp_genbank2gff3.pl bp_genbank_ref_extractor \
bp_generate_histogram.pl bp_heterogeneity_test.pl bp_hivq.pl \
bp_hmmer_to_table.pl bp_index.pl bp_load_gff.pl bp_local_taxonomydb_query.pl \
bp_make_mrna_protein.pl bp_mask_by_search.pl bp_meta_gff.pl bp_mrtrans.pl \
bp_mutate.pl bp_netinstall.pl bp_nexus2nh.pl bp_nrdb.pl bp_oligo_count.pl \
bp_parse_hmmsearch.pl bp_process_gadfly.pl bp_process_sgd.pl \
bp_process_wormbase.pl bp_query_entrez_taxa.pl bp_remote_blast.pl \
bp_revtrans-motif.pl bp_search2alnblocks.pl bp_search2gff.pl bp_search2table.pl \
bp_search2tribe.pl bp_seq_length.pl bp_seqconvert.pl bp_seqcut.pl \
bp_seqfeature_delete.pl bp_seqfeature_gff3.pl bp_seqfeature_load.pl \
bp_seqpart.pl bp_seqret.pl bp_seqretsplit.pl bp_split_seq.pl bp_sreformat.pl \
bp_taxid4species.pl bp_taxonomy2tree.pl bp_translate_seq.pl bp_tree2pag.pl \
bp_unflatten_seq.pl combig-script.sh combig.pl config_data corelist count.pl \
count2huge.pl cpan cpan-mirrors cpan2dist cpanel_json_xs cpanfile-dump \
cpanp cpanp-run-perl crc32 dave dbilogstrip dbiprof dbiproxy dm_date \
dm_zdump enc2xs encguess extract_vba find-compounds.pl findrule gedi h2ph \
h2xs htmltree huge-count.pl huge-delete.pl huge-merge.pl huge-sort.pl \
huge-split.pl hypnotoad instmodsh iperl json_pp json_xs kocos-script.sh \
kocos.pl kwalitee-metrics l4p-tmpl leo libnetcfg lwp-download lwp-dump \
lwp-mirror lwp-request markdent-html markdown2pod mech-dump mo-inline \
modemtest mojo moose-outdated morbo msgconvert mymeta-cpanfile net-server \
a2p bdf2gdfont.pl bp_aacomp bp_biofetch_genbank_proxy bp_bioflat_index \
bp_biogetseq bp_dbsplit bp_download_query_genbank bp_einfo \
bp_extract_feature_seq bp_fastam9_to_table bp_fetch bp_filter_search \
bp_find-blast-matches bp_flanks bp_gccalc bp_genbank2gff3 \
bp_genbank_ref_extractor bp_index bp_local_taxonomydb_query \
bp_make_mrna_protein bp_mask_by_search bp_mrtrans bp_mutate bp_nexus2nh \
bp_nrdb bp_oligo_count bp_process_gadfly bp_process_sgd bp_query_entrez_taxa \
bp_remote_blast.pl bp_revtrans-motif bp_search2alnblocks bp_search2gff \
bp_search2table bp_search2tribe bp_seq_length bp_seqconvert bp_seqcut \
bp_seqpart bp_seqret bp_seqretsplit bp_split_seq bp_sreformat bp_taxid4species \
bp_taxonomy2tree bp_translate_seq bp_tree2pag bp_unflatten_seq c2ph \
combig-script.sh combig.pl config_data corelist count.pl count2huge.pl cpan \
cpan-mirrors cpan2dist cpanel_json_xs cpanp cpanp-run-perl crc32 db_archive \
db_checkpoint db_deadlock db_dump db_hotbackup db_load db_printlog db_recover \
db_sql db_stat db_upgrade db_verify dbilogstrip dbiprof dbiproxy dm_date \
dm_zdump dprofpp enc2xs encguess extract_vba find-compounds.pl find2perl \
findrule gedi h2ph h2xs htmltree huge-count.pl huge-delete.pl huge-merge.pl \
huge-sort.pl huge-split.pl hypnotoad instmodsh json_pp json_xs kocos-script.sh \
kocos.pl l4p-tmpl leo libnetcfg lwp-download lwp-dump lwp-mirror lwp-request \
mech-dump mo-inline modemtest mojo moose-outdated morbo msgconvert net-server \
odf2pod odf_set_fields odf_set_title odfbuild odfextract odffilesearch \
odffindbasic odfhighlight odfmetadoc odfsearch oodoc_test oodoc_version \
package-stash-conflicts pause-permissions pdl pdl2 pdldoc perl perl5.28.1 \
perlbug perlcritic perldl perldoc perlivp perlsh perlthanks perltidy \
piconv pl2pm plackup pod2html pod2latex pod2man pod2text pod2usage \
pod_cover podchecker podselect podspell pptemplate prove ptar ptardiff \
ptargrep ptked ptksh puudecode puuencode rank-script.sh rank.pl re.pl \
readline_usb reply scan-perl-prereqs-nqlite schwartzmon shasum snmpkey \
splain stag-autoschema.pl stag-db.pl stag-diff.pl stag-drawtree.pl \
package-stash-conflicts pdl pdl2 pdldoc perl5.12.1 perlbug perlcritic perldl \
perldoc perlivp perlsh perlthanks perltidy piconv pl2pm plackup pod2html \
pod2latex pod2man pod2text pod2usage pod_cover podchecker podselect podspell \
pptemplate prove psed pstruct ptar ptardiff ptargrep ptked ptksh puudecode \
puuencode rank-script.sh rank.pl readline_usb s2p schwartzmon shasum \
snmpkey splain stag-autoschema.pl stag-db.pl stag-diff.pl stag-drawtree.pl \
stag-filter.pl stag-findsubtree.pl stag-flatten.pl stag-grep.pl stag-handle.pl \
stag-itext2simple.pl stag-itext2sxpr.pl stag-itext2xml.pl stag-join.pl \
stag-merge.pl stag-mogrify.pl stag-parse.pl stag-query.pl stag-splitter.pl \
stag-view.pl stag-xml2itext.pl statistic.pl test-yaml text2odf text2table \
tkjpeg tpage ttree ucalc use-devel-checklib widget xpath xsubpp zipdetails \
stag-view.pl stag-xml2itext.pl statistic.pl streamzip test-yaml text2odf \
text2table tkjpeg tpage ttree ucalc use-devel-checklib widget xpath \
xsubpp yamlpp5-events yamlpp5-highlight yamlpp5-load yamlpp5-load-dump \
yamlpp5-parse-emit zipdetails \
; do
ln "$B/wrapper" "$D$BINDIR/$cmd"
done
Expand Down

0 comments on commit 091d5a4

Please sign in to comment.