perl-wrapper: Install version 1.0

Install wrapper for commands provided by packaged perl.

perl-wrapper.be0

@@ -0,0 +1,135 @@
+#!/usr/bin/env beesh
+
+# BEE_VERSION perl-wrapper-1.1-0
+
+## this file was created by bee init and should be executed to build a
+## bee-package. (Additional hints are located at the end of this file.)
+
+###############################################################################
+## The source URL(s) define the location of the sources that will be
+## downloaded. Version variables may be used to simplify reuse of this bee-file.
+
+SRCURL[0]=""
+
+###############################################################################
+## Add URLs/pathes to patch files to the PATCHURL array.
+## The sources will be patched in the order of the array.
+
+# PATCHURL+=()
+
+###############################################################################
+## Add filename patterns to the EXCLUDE array of files that should not
+## be added to you package but may be present in the image directory.
+
+# EXCLUDE+=()
+
+###############################################################################
+## Uncomment the next statement, if the software may not be able to be built
+## outside the source directory and needs to be built inside the source
+## directory.
+
+# build_in_sourcedir
+
+###############################################################################
+## bee cannot detect buildtypes specified in subdirectories.
+## Sometimes packages "hide" the real sources in a subdirectory named
+## 'src' or 'cmake' or ..
+## use 'sourcesubdir_append' to specify this directory if known.
+
+# sourcesubdir_append src
+
+
+###############################################################################
+## Change the default (auto-detected) steps to
+## extract, patch, configure/setup, build and install the software.
+## Make sure the mee_install function does install everything to the
+## image directory "${D}"
+
+#mee_extract() {
+#    bee_extract "${@}"
+#}
+
+#mee_patch() {
+#    bee_patch "${@}"
+#}
+
+#mee_configure() {
+#    bee_configure
+#}
+
+mee_build() {
+    echo -e '#! /bin/bash\nprun perl $(basename "$0") "$@"' >wrapper
+    chmod +x wrapper
+}
+
+mee_install() {
+    mkdir -p "$D$BINDIR"
+
+    # list generated by
+    # for cmd in $(cd /pkg/perl-5.28.1-0/bin;ls); do test -e /usr/bin/$cmd || echo $cmd;done | fmt -w 80| sed 's/.*/        & \\/'
+    #
+    for cmd in \
+        ansi2html bdf2gdfont.pl bp_aacomp.pl bp_biofetch_genbank_proxy.pl \
+        bp_bioflat_index.pl bp_biogetseq.pl bp_blast2tree.pl bp_bulk_load_gff.pl \
+        bp_chaos_plot.pl bp_classify_hits_kingdom.pl bp_composite_LD.pl \
+        bp_das_server.pl bp_dbsplit.pl bp_download_query_genbank.pl bp_einfo \
+        bp_extract_feature_seq.pl bp_fast_load_gff.pl bp_fastam9_to_table.pl \
+        bp_fetch.pl bp_filter_search.pl bp_find-blast-matches.pl bp_flanks.pl \
+        bp_gccalc.pl bp_genbank2gff.pl bp_genbank2gff3.pl bp_genbank_ref_extractor \
+        bp_generate_histogram.pl bp_heterogeneity_test.pl bp_hivq.pl \
+        bp_hmmer_to_table.pl bp_index.pl bp_load_gff.pl bp_local_taxonomydb_query.pl \
+        bp_make_mrna_protein.pl bp_mask_by_search.pl bp_meta_gff.pl bp_mrtrans.pl \
+        bp_mutate.pl bp_netinstall.pl bp_nexus2nh.pl bp_nrdb.pl bp_oligo_count.pl \
+        bp_parse_hmmsearch.pl bp_process_gadfly.pl bp_process_sgd.pl \
+        bp_process_wormbase.pl bp_query_entrez_taxa.pl bp_remote_blast.pl \
+        bp_revtrans-motif.pl bp_search2alnblocks.pl bp_search2gff.pl bp_search2table.pl \
+        bp_search2tribe.pl bp_seq_length.pl bp_seqconvert.pl bp_seqcut.pl \
+        bp_seqfeature_delete.pl bp_seqfeature_gff3.pl bp_seqfeature_load.pl \
+        bp_seqpart.pl bp_seqret.pl bp_seqretsplit.pl bp_split_seq.pl bp_sreformat.pl \
+        bp_taxid4species.pl bp_taxonomy2tree.pl bp_translate_seq.pl bp_tree2pag.pl \
+        bp_unflatten_seq.pl combig-script.sh combig.pl config_data corelist count.pl \
+        count2huge.pl cpan cpan-mirrors cpan2dist cpanel_json_xs cpanfile-dump \
+        cpanp cpanp-run-perl crc32 dave dbilogstrip dbiprof dbiproxy dm_date \
+        dm_zdump enc2xs encguess extract_vba find-compounds.pl findrule gedi h2ph \
+        h2xs htmltree huge-count.pl huge-delete.pl huge-merge.pl huge-sort.pl \
+        huge-split.pl hypnotoad instmodsh iperl json_pp json_xs kocos-script.sh \
+        kocos.pl kwalitee-metrics l4p-tmpl leo libnetcfg lwp-download lwp-dump \
+        lwp-mirror lwp-request markdent-html markdown2pod mech-dump mo-inline \
+        modemtest mojo moose-outdated morbo msgconvert mymeta-cpanfile net-server \
+        odf2pod odf_set_fields odf_set_title odfbuild odfextract odffilesearch \
+        odffindbasic odfhighlight odfmetadoc odfsearch oodoc_test oodoc_version \
+        package-stash-conflicts pause-permissions pdl pdl2 pdldoc perl perl5.28.1 \
+        perlbug perlcritic perldl perldoc perlivp perlsh perlthanks perltidy \
+        piconv pl2pm plackup pod2html pod2latex pod2man pod2text pod2usage \
+        pod_cover podchecker podselect podspell pptemplate prove ptar ptardiff \
+        ptargrep ptked ptksh puudecode puuencode rank-script.sh rank.pl re.pl \
+        readline_usb reply scan-perl-prereqs-nqlite schwartzmon shasum snmpkey \
+        splain stag-autoschema.pl stag-db.pl stag-diff.pl stag-drawtree.pl \
+        stag-filter.pl stag-findsubtree.pl stag-flatten.pl stag-grep.pl stag-handle.pl \
+        stag-itext2simple.pl stag-itext2sxpr.pl stag-itext2xml.pl stag-join.pl \
+        stag-merge.pl stag-mogrify.pl stag-parse.pl stag-query.pl stag-splitter.pl \
+        stag-view.pl stag-xml2itext.pl statistic.pl test-yaml text2odf text2table \
+        tkjpeg tpage ttree ucalc use-devel-checklib widget xpath xsubpp zipdetails \
+    ; do
+        ln "$B/wrapper" "$D$BINDIR/$cmd"
+    done
+}
+## by default this may be 'make install DESTDIR="${D}"'
+
+###############################################################################
+##
+## Additional hints:
+##
+## The name of this bee-file should follow the following naming convention:
+##     pkgname-pkgversion-pkgrevision.bee
+##
+## You may remove all comments as long as SRCURL[0] is set.
+##
+## Everything in this file will be executed in a bash environment.
+##
+## Build the package by executing
+##     './pkg-version-N.bee' or
+##     'beesh ./pkg-version-N.bee'
+##
+## see http://beezinga.org/
+##