python-3.7.6: Add some python packages

mariux64 · Mar 29, 2020 · 8a1a6e9 · 8a1a6e9
1 parent f030a17
commit 8a1a6e9
Showing 1 changed file with 19 additions and 0 deletions.
diff --git a/python-3.7.6-0.build.sh b/python-3.7.6-0.build.sh
@@ -209,6 +209,21 @@ pip3 install --prefix=$PREFIX louvain        # monocle3 prep for Helene
 pip3 install --prefix=$PREFIX selenium       # 19.7.19 Kreitler  -> https://webxray.org/
 pip3 install --prefix=$PREFIX cooltools      # Maria Valieva 17.7.2019
 pip3 install --prefix=$PREFIX gmpy           # From viper context (Helpdesk Laura Glaser 9.8.2019)
+pip3 install --prefix=$PREFIX tensorflow==2.0.1         # tensorflow-2.1.0 needs spezial libs and nightly version(2.2.0) dont
+pip3 install --prefix=$PREFIX torch
+pip3 install --prefix=$PREFIX torchvision
+pip3 install --prefix=$PREFIX plotly
+pip3 install --prefix=$PREFIX pyOpenCL
+pip3 install --prefix=$PREFIX docopt
+pip3 install --prefix=$PREFIX dbus-python
+pip3 install --prefix=$PREFIX distro
+pip3 install --prefix=$PREFIX notify
+pip3 install --prefix=$PREFIX ply
+pip3 install --prefix=$PREFIX threadpoolctl
+
+pip3 install --prefix=$PREFIX pyopengl
+rm -rf ${PREFIX}/lib/python$PYTHONVER/site-packages/OpenGL/Tk
+# creates error, so remove it
 
 # pip3 install --prefix=$PREFIX HiCExplorer  # Would be a nice to have, but it likes to downgrade too much, pick some cherries
 pip3 install --prefix=$PREFIX HiCMatrix
@@ -217,6 +232,10 @@ pip3 install --prefix=$PREFIX pyGenomeTracks
 pip3 install --prefix=$PREFIX python-bioformats
 
 pip3 install --prefix=$PREFIX jupyterlab      # request Peter Arndt
+pip3 install --prefix=$PREFIX jupyterlab-git
+pip3 install --prefix=$PREFIX libxml2-python3 # required by several bee packages after swich to python3
+pip3 install --prefix=$PREFIX scour           # https://github.molgen.mpg.de/mariux64/pkg-scripts/issues/98
+pip3 install --prefix=$PREFIX multiqc
 
 # try to load all packages, maybe we can see installation errors
 python3 -c 'help("modules")' > /dev/null