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python-3.6.4-1: Rebuild with new packages due to user request
New packages: - cutadapt - python-bioformats - umi-tools - sphinx - recommonmark - fastcluster - pydot - pygraphviz - deeptools - HTSeq - keras
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#! /bin/sh | ||
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set -xe | ||
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PKG=python | ||
VERSION=3.6.4 | ||
BUILD=1 | ||
PREFIX=/pkg/$PKG-$VERSION-$BUILD | ||
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exec </dev/null | ||
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mkdir -p $PREFIX | ||
cat >$PREFIX/profile <<-EOF | ||
PATH=$PREFIX/bin:\$PATH | ||
EOF | ||
. $PREFIX/profile | ||
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mkdir -p $PREFIX/build | ||
cd $PREFIX/build | ||
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test -e Python-$VERSION.tar.xz || wget https://www.python.org/ftp/python/$VERSION/Python-$VERSION.tar.xz | ||
test -d Python-$VERSION || tar xvf Python-$VERSION.tar.xz | ||
cd Python-$VERSION | ||
./configure \ | ||
--prefix=$PREFIX | ||
make -j $(nproc) | ||
make install | ||
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python3 -m ensurepip | ||
pip3 install -I pip | ||
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pip3 install ipython[all] | ||
pip3 install SciPy NumPy Matplotlib pandas SymPy nose | ||
pip3 install scikit-learn | ||
pip3 install seaborn | ||
pip3 install metaseq | ||
pip3 install Mako | ||
pip3 install meson | ||
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# Helpdesk 01/24/18 16:19, Sabrina Krakau | ||
pip3 install cutadapt | ||
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# other popular packages | ||
pip3 install python-bioformats | ||
pip3 install umi-tools | ||
pip3 install sphinx | ||
pip3 install recommonmark | ||
pip3 install fastcluster | ||
pip3 install pydot | ||
pip3 install pygraphviz | ||
pip3 install deeptools | ||
pip3 install HTSeq | ||
pip3 install keras | ||
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# exit 1 # final test, inhibits 'closing' on success | ||
exit |