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python-3.6.4-1: Rebuild with new packages due to user request
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New packages:

  - cutadapt
  - python-bioformats
  - umi-tools
  - sphinx
  - recommonmark
  - fastcluster
  - pydot
  - pygraphviz
  - deeptools
  - HTSeq
  - keras
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thomas committed Jan 24, 2018
1 parent 08ce2e1 commit 931ce7a
Showing 1 changed file with 56 additions and 0 deletions.
56 changes: 56 additions & 0 deletions python-3.6.4-1.build.sh
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#! /bin/sh

set -xe

PKG=python
VERSION=3.6.4
BUILD=1
PREFIX=/pkg/$PKG-$VERSION-$BUILD

exec </dev/null

mkdir -p $PREFIX
cat >$PREFIX/profile <<-EOF
PATH=$PREFIX/bin:\$PATH
EOF
. $PREFIX/profile

mkdir -p $PREFIX/build
cd $PREFIX/build

test -e Python-$VERSION.tar.xz || wget https://www.python.org/ftp/python/$VERSION/Python-$VERSION.tar.xz
test -d Python-$VERSION || tar xvf Python-$VERSION.tar.xz
cd Python-$VERSION
./configure \
--prefix=$PREFIX
make -j $(nproc)
make install

python3 -m ensurepip
pip3 install -I pip

pip3 install ipython[all]
pip3 install SciPy NumPy Matplotlib pandas SymPy nose
pip3 install scikit-learn
pip3 install seaborn
pip3 install metaseq
pip3 install Mako
pip3 install meson

# Helpdesk 01/24/18 16:19, Sabrina Krakau
pip3 install cutadapt

# other popular packages
pip3 install python-bioformats
pip3 install umi-tools
pip3 install sphinx
pip3 install recommonmark
pip3 install fastcluster
pip3 install pydot
pip3 install pygraphviz
pip3 install deeptools
pip3 install HTSeq
pip3 install keras

# exit 1 # final test, inhibits 'closing' on success
exit

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