Merge pull request #27 from mariux64/Add-julia-1.0

Add julia 1.0

julia-1.0.0-0.build.sh

@@ -0,0 +1,113 @@
+#! /bin/bash
+
+PKG=julia
+VERSION=1.0.0
+BUILD=0
+
+PREFIX=/pkg/$PKG-$VERSION-$BUILD
+#PREFIX=/dev/shm/$PKG-$VERSION-$BUILD
+
+set -xe
+umask 022
+
+BUILD_TMPDIR=/dev/shm/$PKG-$VERSION-$BUILD.build.tmp
+test -d $BUILD_TMPDIR && rm -rf $BUILD_TMPDIR
+mkdir -p $BUILD_TMPDIR/home
+export TMPDIR=$BUILD_TMPDIR
+export HOME=$BUILD_TMPDIR/home
+
+exec </dev/null
+
+mkdir -p $PREFIX
+cat >$PREFIX/profile <<-EOF
+	PATH=$PREFIX/bin:\$PATH
+EOF
+. $PREFIX/profile
+
+export MAKEFLAGS="-j $(nproc)"
+
+BUILDDIR=$PREFIX/build
+
+mkdir -p $BUILDDIR
+cd $BUILDDIR
+
+test -e julia-${VERSION}-full.tar.gz || wget https://github.com/JuliaLang/julia/releases/download/v${VERSION}/julia-${VERSION}-full.tar.gz
+test -d julia        || tar xvf julia-${VERSION}-full.tar.gz
+cd julia
+
+
+patch -p1 <<'EOF'
+From 44d590277454035841803083f57af1b861192595 Mon Sep 17 00:00:00 2001
+From: Donald Buczek <buczek@molgen.mpg.de>
+Date: Fri, 30 Jun 2017 11:41:41 +0200
+Subject: [PATCH 1/2] Allow OpenBLAS NUM_THREADS to be overwritten
+When building OpenBLAS we have some default for its NUM_THREADS build
+option. Allow this default to be overwritten by a new
+OPENBLAS_NUM_THREADS make variable.
+---
+ deps/blas.mk | 9 +++++----
+ 1 file changed, 5 insertions(+), 4 deletions(-)
+diff --git a/deps/blas.mk b/deps/blas.mk
+index 55216c8..b9bf8ed 100644
+--- a/deps/blas.mk
++++ b/deps/blas.mk
+@@ -14,17 +14,18 @@ OPENBLAS_BUILD_OPTS += GEMM_MULTITHREADING_THRESHOLD=50
+ ifneq ($(ARCH),x86_64)
+ # Assume we can't address much memory to spawn many threads
+ # It is also unlikely that 32-bit architectures have too many cores
+-OPENBLAS_BUILD_OPTS += NUM_THREADS=8
++OPENBLAS_NUM_THREADS:=8
+ else ifeq ($(OS),WINNT)
+ # Windows seems unable to handle very many
+-OPENBLAS_BUILD_OPTS += NUM_THREADS=16
++OPENBLAS_NUM_THREADS:=16
+ else ifeq ($(OS),Darwin)
+ # This should suffice for the largest macs
+-OPENBLAS_BUILD_OPTS += NUM_THREADS=16
++OPENBLAS_NUM_THREADS:=16
+ else
+ # On linux, try to provision for the largest possible machine currently
+-OPENBLAS_BUILD_OPTS += NUM_THREADS=16
++OPENBLAS_NUM_THREADS:=16
+ endif
++OPENBLAS_BUILD_OPTS += NUM_THREADS=$(OPENBLAS_NUM_THREADS)
+ else
+ OPENBLAS_BUILD_OPTS += USE_THREAD=0
+ endif
+--
+2.4.1
+---
+
+ist etwas runtergehackt
+aber dadurch dass auf all unseren Servern mehr als 8 threads sind, sollte es
+immer greifen
+mit `OPENBLAS_NUM_THREADS=x julia` kann man es zur laufzeit erhoehen
+diff --git a/base/sysimg.jl b/base/sysimg.jl
+index dd605b0..ed3c7b2 100644
+--- a/base/sysimg.jl
++++ b/base/sysimg.jl
+@@ -459,7 +459,7 @@ function __init__()
+     if !haskey(ENV, "OPENBLAS_NUM_THREADS") && !haskey(ENV, "OMP_NUM_THREADS")
+         cpu_threads = Sys.CPU_THREADS::Int
+         if cpu_threads > 8 # always at most 8
+-            ENV["OPENBLAS_NUM_THREADS"] = "8"
++            ENV["OPENBLAS_NUM_THREADS"] = "1"
+         elseif haskey(ENV, "JULIA_CPU_THREADS") # or exactly as specified
+             ENV["OPENBLAS_NUM_THREADS"] = cpu_threads
+         end # otherwise, trust that openblas will pick CPU_THREADS anyways, without any intervention
+--
+EOF
+
+
+make -j $(nproc) prefix="${PREFIX}" MARCH=x86-64 OPENBLAS_NUM_THREADS=80
+make install prefix=${PREFIX} MARCH=x86-64
+
+cp -av ${BUILDDIR}/julia/usr/bin/julia-debug ${PREFIX}/bin/
+cp -av ${BUILDDIR}/julia/usr/lib/libjulia-debug.so* ${PREFIX}/lib/
+cp -av ${BUILDDIR}/julia/usr/lib/julia/sys-debug.so ${PREFIX}/lib/julia/
+
+for i in `ls ${PREFIX}/bin`; do
+	ln -sv ${PREFIX}/bin/$i{,-$VERSION}
+done
+
+exit