…ariux64/pkg-scripts/pull/104/files"

This reverts commit 10307f6.

The commit has been added to the master branch by accident. Remove it.

Create bee file with

    cp python-3.7.4-2.build.sh python-3.7.6-0.build.sh

and update version and build number.

If pip finds the system installation path not writable, it falls
back to --user and installs into ~/.local.

Of course, when this script runs, its system installation path should
be writable. However, other errors in our environment, which prevent
$PREFIX from being written to, might go undetected because of the
fallback.

Specify --prefix to abort if $PREFIX is not writable.

Add

    python3 -c 'help("modules")'

at the end of build script. The idea is, that this command requires all
available modules to be loaded and would emmit error messages and
non-zero exist status in case of any errors in the installation.

We are going to install pycuda into this package, which requires
cuda at compile- and runtime, so add the cuda package to this packages
environment.

We are going to install Tensorflow into this package.

Tensorflow loads implementation libraries at runtime which need to be
found. Add LD_LIBRARY_PATH to avoid runtime errors like

    Traceback (most recent call last):
      File "/dev/shm/python-3.7.6-0/lib/python3.7/site-packages/tensorflow-2.1.0-py3.7-linux-x86_64.egg/tensorflow_core/python/pywrap_tensorflow.py", line 58, in <module>
        from tensorflow.python.pywrap_tensorflow_internal import *
      File "/dev/shm/python-3.7.6-0/lib/python3.7/site-packages/tensorflow-2.1.0-py3.7-linux-x86_64.egg/tensorflow_core/python/pywrap_tensorflow_internal.py", line 28, in <module>
        _pywrap_tensorflow_internal = swig_import_helper()
      File "/dev/shm/python-3.7.6-0/lib/python3.7/site-packages/tensorflow-2.1.0-py3.7-linux-x86_64.egg/tensorflow_core/python/pywrap_tensorflow_internal.py", line 24, in swig_import_helper
        _mod = imp.load_module('_pywrap_tensorflow_internal', fp, pathname, description)
      File "/dev/shm/python-3.7.6-0/lib/python3.7/imp.py", line 242, in load_module
        return load_dynamic(name, filename, file)
      File "/dev/shm/python-3.7.6-0/lib/python3.7/imp.py", line 342, in load_dynamic
        return _load(spec)
    ImportError: libnccl.so.2: cannot open shared object file: No such file or directory

We are going to install Tensorflow into this package. The compilation of
Tendowflow produces huge amounts of data (335612 files, 35 GB) in
~/.cache/bazel.

Change BUILD_TMPDIR (which implies $HOME during the build) away from
/dev/shm to avoid running out of memory.

The requireiments of hic2cool would downgrade a lot of packages, so
build it from source.

The latest version of pyGenomeTracks on PyPi (3.3) has a dependency on
hicmatrix>=12 which is not yet published. Request previous version.

Store the variants of BOOST_VERSION in an array instead of in a space
seperated string to avoid parsing it over and over.

The distribuition server seems to be broken at the moment:

    + wget https://dl.bintray.com/boostorg/release/1.72.0/source/boost_1_72_0.tar.gz
    --2020-03-28 13:02:47--  https://dl.bintray.com/boostorg/release/1.72.0/source/boost_1_72_0.tar.gz
    Resolving dl.bintray.com... 52.28.187.224, 52.29.129.139
    Connecting to dl.bintray.com|52.28.187.224|:443... connected.
    HTTP request sent, awaiting response... 403 Forbidden
    2020-03-28 13:02:47 ERROR 403: Forbidden.

Use cached copy.

This reverts commit 5e93e04.

The requirements of hic2cool have been updated and we can fetch it with
pip again [1] [2]

[1]: https://github.com/4dn-dcic/hic2cool/issues/46
[2]: https://github.com/4dn-dcic/hic2cool/releases/tag/0.8.2

Create bee file with

    mv python-3.7.6.build.sh python-3.7.7.build.sh

and update version.