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Add Python 3.8.9 #154

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merged 2 commits into from
Apr 9, 2021
Merged

Add Python 3.8.9 #154

merged 2 commits into from
Apr 9, 2021

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pmenzel
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@pmenzel pmenzel commented Apr 9, 2021

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[Python 3.8.9 change-log][1]

The update was motivated to fix [a regression in python-isal, noticed by
the SeqCore facility in cutadapt][2].

Build on *theinternet*, as it failed on *invidia* due to hardware(?)
issues, and on the 16 GB RAM Dell OptiPlex 5055 *serotimor* due to
memory requirements higher than 16 GB (OOM).

Output of test:

    + echo '# START load test.'
    # START load test.
    + python3 -c 'help("modules")'
    /pkg/python-3.8.9-0/lib/python3.8/site-packages/IPython/kernel/__init__.py:12:
    ShimWarning: The `IPython.kernel` package has been deprecated since IPython 4.0.You should import from ipykernel or jupyter_client instead.  warn("The `IPython.kernel` package has been deprecated since IPython 4.0."
    INFO:numexpr.utils:Note: NumExpr detected 12 cores but "NUMEXPR_MAX_THREADS" not set, so enforcing safe limit of 8.
    INFO:numexpr.utils:NumExpr defaulting to 8 threads.
    /pkg/python-3.8.9-0/lib/python3.8/site-packages/setuptools/distutils_patch.py:25:
    UserWarning: Distutils was imported before Setuptools. This usage is discouraged and may exhibit undesirable behaviors or errors. Please use Setuptools' objects directly or at least import Setuptools first.
      warnings.warn( 2021-04-09 03:39:57.891227: I tensorflow/stream_executor/platform/default/dso_loader.cc:49] Successfully opened dynamic library libcudart.so.11.0
    /pkg/python-3.8.9-0/lib/python3.8/pkgutil.py:92:
    MatplotlibDeprecationWarning: The matplotlib.compat module was deprecated in Matplotlib 3.3 and will be removed two minor releases later.
      __import__(info.name)
    ERROR:External:Install rpy2 to enable simple support for the R language.
    WARNING:pyomo.core:DEPRECATED: The use of pyomo.contrib.simple model is deprecated. This capability is now supported in the pyomo_simplemodel package, which is included in the pyomo_community distribution.  (deprecated in 5.6.9)
    (called from /pkg/python-3.8.9-0/lib/python3.8/site-packages/pyomo/contrib/simplemodel/__init__.py:4)
    INFO:torch.distributed.nn.jit.instantiator:Created a temporary directory at /scratch/local2/python-3.8.9-0.build.tmp/tmp24jd1c25
    INFO:torch.distributed.nn.jit.instantiator:Writing /scratch/local2/python-3.8.9-0.build.tmp/tmp24jd1c25/_remote_module_non_sriptable.py
    /pkg/python-3.8.9-0/lib/python3.8/pkgutil.py:107:
    VisibleDeprecationWarning:

    zmq.eventloop.minitornado is deprecated in pyzmq 14.0 and will be removed.
        Install tornado itself to use zmq with the tornado IOLoop.

    + echo '# END load test.'
    # END load test.

[1]: https://www.python.org/downloads/release/python-389/
[2]: https://github.com/marcelm/cutadapt/issues/520
@pmenzel pmenzel merged commit a311852 into master Apr 9, 2021
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