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mira · Aug 16, 2022 · 0054e09 · 0054e09
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diff --git a/Visualization_Module/27709-output.txt b/Visualization_Module/27709-output.txt
diff --git a/Visualization_Module/28163-output.txt b/Visualization_Module/28163-output.txt
diff --git a/Visualization_Module/30081-output.txt b/Visualization_Module/30081-output.txt
@@ -0,0 +1,16 @@
+Error using load
+Unable to read file 'cucv.mat'. No such file or directory.
+
+Error in dp_RHO_avg_k_AR_DP (line 5)
+
+
+
+MATLAB:load:couldNotReadFile
+Error using load
+Unable to read file 'cucv.mat'. No such file or directory.
+
+Error in dp_RHO_avg_k_AR_DP (line 5)
+
+
+
+MATLAB:load:couldNotReadFile
diff --git a/Visualization_Module/AR_create_standalone.m b/Visualization_Module/AR_create_standalone.m
@@ -0,0 +1,11 @@
+%  script AR_create_standalone
+% Fun = function to create a standalone from
+% Dir = directory of the subfunctions
+
+mkdir('/volume/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox_standalone')
+cd('/volume/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox')
+eval(['mcc -m  /volume/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox_standalone/dp_spls_standalone.m '...
+          '-d /volume/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox_standalone/main']);
+
+test = system('qsub /volume/DP_FEF/ScrFun/ScriptsRepository/DP_SPLS_standalone.sh');
+
diff --git a/Visualization_Module/DP_SPLS_para_FEF b/Visualization_Module/DP_SPLS_para_FEF
diff --git a/Visualization_Module/Monteiro2016_JNsciMeth_SPLS.pdf b/Visualization_Module/Monteiro2016_JNsciMeth_SPLS.pdf
diff --git a/Visualization_Module/ar_write_image.m b/Visualization_Module/ar_write_image.m
@@ -0,0 +1,12 @@
+%% test Anne
+
+mask_path = NM.brainmask{1}; %as nii
+
+ImgData = spm_vol(mask_path);
+ImgDataData = spm_read_vols(ImgData);
+
+ImgDataData(ImgDataData >= 0) = final_parameters{1,4}(:,1)';
+
+ImgData.fname = '/volume/DP_FEF/Analysis/17-Apr-2018/LV1BrainWeights.nii';
+
+spm_write_vol(ImgData,ImgDataData);
diff --git a/Visualization_Module/dp_RHO_avg.prj b/Visualization_Module/dp_RHO_avg.prj
@@ -0,0 +1,116 @@
+<deployment-project plugin="plugin.ezdeploy" plugin-version="1.0">
+  <configuration build-checksum="3059990673" file="/volume/DP_FEF/ScrFun/ScriptsRepository/dp_RHO_avg.prj" location="/volume/DP_FEF/ScrFun/ScriptsRepository" name="dp_RHO_avg" preferred-package-location="/volume/DP_FEF/ScrFun/ScriptsRepository/dp_RHO_avg/for_redistribution" preferred-package-type="package.type.install" target="target.ezdeploy.standalone" target-name="Application Compiler">
+    <param.appname>dp_RHO_avg</param.appname>
+    <param.icon />
+    <param.icons />
+    <param.version>1.0</param.version>
+    <param.authnamewatermark />
+    <param.email />
+    <param.company />
+    <param.summary />
+    <param.description />
+    <param.screenshot />
+    <param.guid />
+    <param.net.saved.interface />
+    <param.installpath.string>/dp_RHO_avg/</param.installpath.string>
+    <param.installpath.combo>option.installpath.user</param.installpath.combo>
+    <param.logo />
+    <param.install.notes />
+    <param.intermediate>${PROJECT_ROOT}/dp_RHO_avg/for_testing</param.intermediate>
+    <param.files.only>${PROJECT_ROOT}/dp_RHO_avg/for_redistribution_files_only</param.files.only>
+    <param.output>${PROJECT_ROOT}/dp_RHO_avg/for_redistribution</param.output>
+    <param.enable.clean.build>false</param.enable.clean.build>
+    <param.user.defined.mcr.options />
+    <param.embed.ctf>true</param.embed.ctf>
+    <param.target.type>subtarget.standalone</param.target.type>
+    <param.support.packages />
+    <param.required.mcr.products>
+      <item>35000</item>
+      <item>35010</item>
+      <item>35001</item>
+    </param.required.mcr.products>
+    <param.web.mcr>true</param.web.mcr>
+    <param.package.mcr>false</param.package.mcr>
+    <param.no.mcr>false</param.no.mcr>
+    <param.web.mcr.name>MyAppInstaller_web</param.web.mcr.name>
+    <param.package.mcr.name>MyAppInstaller_mcr</param.package.mcr.name>
+    <param.no.mcr.name>MyAppInstaller_app</param.no.mcr.name>
+    <param.windows.command.prompt>false</param.windows.command.prompt>
+    <param.create.log>false</param.create.log>
+    <param.log.file />
+    <unset>
+      <param.icon />
+      <param.icons />
+      <param.version />
+      <param.authnamewatermark />
+      <param.email />
+      <param.company />
+      <param.summary />
+      <param.description />
+      <param.screenshot />
+      <param.guid />
+      <param.net.saved.interface />
+      <param.installpath.string />
+      <param.installpath.combo />
+      <param.logo />
+      <param.intermediate />
+      <param.files.only />
+      <param.output />
+      <param.enable.clean.build />
+      <param.user.defined.mcr.options />
+      <param.embed.ctf />
+      <param.target.type />
+      <param.support.packages />
+      <param.web.mcr />
+      <param.package.mcr />
+      <param.no.mcr />
+      <param.web.mcr.name />
+      <param.package.mcr.name />
+      <param.no.mcr.name />
+      <param.windows.command.prompt />
+      <param.create.log />
+      <param.log.file />
+    </unset>
+    <fileset.main>
+      <file>${PROJECT_ROOT}/dp_RHO_avg_k_AR.m</file>
+    </fileset.main>
+    <fileset.resources>
+      <file>/volume/DP_FEF/Doc/SPLS/spls.m</file>
+      <file>${PROJECT_ROOT}/dp_partition_holdout.m</file>
+    </fileset.resources>
+    <fileset.package />
+    <build-deliverables>
+      <file location="${PROJECT_ROOT}/dp_RHO_avg/for_testing" name="splash.png" optional="false">/volume/DP_FEF/ScrFun/ScriptsRepository/dp_RHO_avg/for_testing/splash.png</file>
+      <file location="${PROJECT_ROOT}/dp_RHO_avg/for_testing" name="readme.txt" optional="true">/volume/DP_FEF/ScrFun/ScriptsRepository/dp_RHO_avg/for_testing/readme.txt</file>
+      <file location="${PROJECT_ROOT}/dp_RHO_avg/for_testing" name="run_dp_RHO_avg.sh" optional="false">/volume/DP_FEF/ScrFun/ScriptsRepository/dp_RHO_avg/for_testing/run_dp_RHO_avg.sh</file>
+      <file location="${PROJECT_ROOT}/dp_RHO_avg/for_testing" name="dp_RHO_avg" optional="false">/volume/DP_FEF/ScrFun/ScriptsRepository/dp_RHO_avg/for_testing/dp_RHO_avg</file>
+    </build-deliverables>
+    <workflow />
+    <matlab>
+      <root>/opt/matlab/R2015a</root>
+      <toolboxes>
+        <toolbox name="matlabcoder" />
+      </toolboxes>
+      <toolbox>
+        <matlabcoder>
+          <enabled>true</enabled>
+        </matlabcoder>
+      </toolbox>
+    </matlab>
+    <platform>
+      <unix>true</unix>
+      <mac>false</mac>
+      <windows>false</windows>
+      <win2k>false</win2k>
+      <winxp>false</winxp>
+      <vista>false</vista>
+      <linux>true</linux>
+      <solaris>false</solaris>
+      <osver>3.10.0-693.17.1.el7.x86_64</osver>
+      <os32>false</os32>
+      <os64>true</os64>
+      <arch>glnxa64</arch>
+      <matlab>true</matlab>
+    </platform>
+  </configuration>
+</deployment-project>
diff --git a/Visualization_Module/dp_RHO_avg_1.prj b/Visualization_Module/dp_RHO_avg_1.prj
@@ -0,0 +1,116 @@
+<deployment-project plugin="plugin.ezdeploy" plugin-version="1.0">
+  <configuration build-checksum="2541103311" file="/volume/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox/dp_RHO_avg_1.prj" location="/volume/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox" name="dp_RHO_avg_1" preferred-package-location="/volume/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox/dp_RHO_avg_1/for_redistribution" preferred-package-type="package.type.install" target="target.ezdeploy.standalone" target-name="Application Compiler">
+    <param.appname>dp_RHO_avg_1</param.appname>
+    <param.icon />
+    <param.icons />
+    <param.version>1.0</param.version>
+    <param.authnamewatermark />
+    <param.email />
+    <param.company />
+    <param.summary />
+    <param.description />
+    <param.screenshot />
+    <param.guid />
+    <param.net.saved.interface />
+    <param.installpath.string>/dp_RHO_avg_1/</param.installpath.string>
+    <param.installpath.combo>option.installpath.user</param.installpath.combo>
+    <param.logo />
+    <param.install.notes />
+    <param.intermediate>${PROJECT_ROOT}/dp_RHO_avg_1/for_testing</param.intermediate>
+    <param.files.only>${PROJECT_ROOT}/dp_RHO_avg_1/for_redistribution_files_only</param.files.only>
+    <param.output>${PROJECT_ROOT}/dp_RHO_avg_1/for_redistribution</param.output>
+    <param.enable.clean.build>false</param.enable.clean.build>
+    <param.user.defined.mcr.options />
+    <param.embed.ctf>true</param.embed.ctf>
+    <param.target.type>subtarget.standalone</param.target.type>
+    <param.support.packages />
+    <param.required.mcr.products>
+      <item>35000</item>
+      <item>35010</item>
+      <item>35001</item>
+    </param.required.mcr.products>
+    <param.web.mcr>true</param.web.mcr>
+    <param.package.mcr>false</param.package.mcr>
+    <param.no.mcr>false</param.no.mcr>
+    <param.web.mcr.name>MyAppInstaller_web</param.web.mcr.name>
+    <param.package.mcr.name>MyAppInstaller_mcr</param.package.mcr.name>
+    <param.no.mcr.name>MyAppInstaller_app</param.no.mcr.name>
+    <param.windows.command.prompt>false</param.windows.command.prompt>
+    <param.create.log>false</param.create.log>
+    <param.log.file />
+    <unset>
+      <param.icon />
+      <param.icons />
+      <param.version />
+      <param.authnamewatermark />
+      <param.email />
+      <param.company />
+      <param.summary />
+      <param.description />
+      <param.screenshot />
+      <param.guid />
+      <param.net.saved.interface />
+      <param.installpath.string />
+      <param.installpath.combo />
+      <param.logo />
+      <param.intermediate />
+      <param.files.only />
+      <param.output />
+      <param.enable.clean.build />
+      <param.user.defined.mcr.options />
+      <param.embed.ctf />
+      <param.target.type />
+      <param.support.packages />
+      <param.web.mcr />
+      <param.package.mcr />
+      <param.no.mcr />
+      <param.web.mcr.name />
+      <param.package.mcr.name />
+      <param.no.mcr.name />
+      <param.windows.command.prompt />
+      <param.create.log />
+      <param.log.file />
+    </unset>
+    <fileset.main>
+      <file>${PROJECT_ROOT}/dp_RHO_avg_k_AR.m</file>
+    </fileset.main>
+    <fileset.resources>
+      <file>/volume/DP_FEF/Doc/SPLS/spls.m</file>
+      <file>${PROJECT_ROOT}/dp_partition_holdout.m</file>
+    </fileset.resources>
+    <fileset.package />
+    <build-deliverables>
+      <file location="${PROJECT_ROOT}/dp_RHO_avg_1/for_testing" name="splash.png" optional="false">/volume/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox/dp_RHO_avg_1/for_testing/splash.png</file>
+      <file location="${PROJECT_ROOT}/dp_RHO_avg_1/for_testing" name="readme.txt" optional="true">/volume/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox/dp_RHO_avg_1/for_testing/readme.txt</file>
+      <file location="${PROJECT_ROOT}/dp_RHO_avg_1/for_testing" name="run_dp_RHO_avg_1.sh" optional="false">/volume/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox/dp_RHO_avg_1/for_testing/run_dp_RHO_avg_1.sh</file>
+      <file location="${PROJECT_ROOT}/dp_RHO_avg_1/for_testing" name="dp_RHO_avg_1" optional="false">/volume/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox/dp_RHO_avg_1/for_testing/dp_RHO_avg_1</file>
+    </build-deliverables>
+    <workflow />
+    <matlab>
+      <root>/opt/matlab/R2015a</root>
+      <toolboxes>
+        <toolbox name="matlabcoder" />
+      </toolboxes>
+      <toolbox>
+        <matlabcoder>
+          <enabled>true</enabled>
+        </matlabcoder>
+      </toolbox>
+    </matlab>
+    <platform>
+      <unix>true</unix>
+      <mac>false</mac>
+      <windows>false</windows>
+      <win2k>false</win2k>
+      <winxp>false</winxp>
+      <vista>false</vista>
+      <linux>true</linux>
+      <solaris>false</solaris>
+      <osver>3.10.0-693.17.1.el7.x86_64</osver>
+      <os32>false</os32>
+      <os64>true</os64>
+      <arch>glnxa64</arch>
+      <matlab>true</matlab>
+    </platform>
+  </configuration>
+</deployment-project>
diff --git a/Visualization_Module/dp_RHO_avg_100k.m b/Visualization_Module/dp_RHO_avg_100k.m
@@ -0,0 +1,13 @@
+%% new function for cu/cv combination and 100 splits
+
+function dp_RHO_avg_100k(i, cu_str, cv_str, tp_str, hyperopt_folder)
+
+cu = str2double(cu_str); cv = str2double(cv_str); tp = str2double(tp_str);
+load([hyperopt_folder '/keep_in_partition.mat']);
+RHO = dp_k_split(tp, keep_in_data_x, keep_in_data_y, cu, cv);
+
+FID_RHO = fopen([hyperopt_folder '/RHO_' i '.txt'],'w');
+fprintf(FID_RHO, '%.4f', RHO);
+fclose(FID_RHO);
+
+end