Add files via upload

Visualization_Module/dp_results_collection_clean.m

@@ -0,0 +1,73 @@
+%% DP function to analyze results in varying grid densities
+% addpath(genpath('/opt/NM/NeuroMiner_Elessar_1.10_beorn/'));
+addpath(genpath('/opt/NM/NeuroMiner_Elessar_1.11_beorn/'));
+% addpath(genpath('/opt/NM/test_versions/NeuroMiner_May16_2022/'));
+addpath('/opt/SPM/spm12_v6685_cat12_r1207/');
+addpath(genpath('/volume/DP_FEF/ScrFun/ScriptsRepository'));
+addpath(genpath('/opt/PRONIASoftware/Developpment/DataAllCron/PRONIA_JuliaCode'));
+
+results_paths = {'/volume/HCStress/Analysis/10-Jun-2022/CISS_636_IQRadd_NCV55_single_folds_bestmerge_noval_min10_2020_5000AUC_Dev_2022/final_results/result_BS.mat'};
+
+IN.atlases_chosen = {'yeo', 'buckner', 'brainnetome', 'cerebellum', 'YB17', 'YB7', 'YB8'};
+IN.atlas_directory = '/volume/HCStress/Data/MRI/Atlases';
+IN.plot_all = false;
+IN.specific = {'atlas', 'behavior', 'images'}; % 'atlas', 'behavior', 'images', 'sociodemographic', 'medication_wais', 'outcome', 'medication_wais'
+IN.SD_selection = {'BDI', 'PANSS', 'GAF', 'NEO', 'WHO', 'neurocognition'}; %'BDI', 'GAF', 'NEO', 'QOL'
+IN.type = 1; % 1:new, 2:old
+IN.analysis_origin = 1; % 1: PRONIA, 2: other
+
+for i=1:numel(results_paths)
+
+    IN.results_path = results_paths{i};
+    load(IN.results_path)
+%     input.X = input.MRI;
+    max_iter = 1;
+
+    if isfield(output, 'validation_results')
+        max_iter=2;
+    end
+
+    for a=1:max_iter
+
+        switch a
+
+            case 1
+                IN.results_path = results_paths{i};
+                IN.results_path = strrep(IN.results_path, '.mat', '_final_vis.mat');
+                save(IN.results_path, 'input', 'output', 'setup');
+            case 2
+                IN.results_path = results_paths{i};
+                IN.results_path = strrep(IN.results_path, '.mat', '_validation_vis.mat');
+                save(IN.results_path, 'input', 'output', 'setup');
+        end
+
+        if contains(IN.results_path, 'CTQ') & ~contains(IN.results_path, 'immune', 'IgnoreCase', true)
+            IN.overall_analysis = 'Stress';
+        elseif contains(IN.results_path, 'CISS')
+            IN.overall_analysis = 'Resilience';
+        elseif contains(IN.results_path, 'WSS')
+            IN.overall_analysis = 'Schizotypy';
+        elseif contains(IN.results_path, 'Mimics')
+            IN.overall_analysis = 'Mimics';
+        elseif contains(IN.results_path, 'immune', 'IgnoreCase', true)
+            IN.overall_analysis = 'immune';
+        elseif contains(IN.results_path, 'MDD', 'IgnoreCase', true)
+            IN.overall_analysis = 'MDD_Trauma';
+        elseif contains(IN.results_path, 'FF', 'IgnoreCase', true)
+            IN.overall_analysis = 'FF';
+        elseif contains(IN.results_path, 'COPE', 'IgnoreCase', true)
+            IN.overall_analysis = 'COPE';
+        else
+            disp('Something''s wrong!');
+        end
+
+        dp_visualize_data_Devmod(IN);
+
+    end
+
+end
+
+% compute adjusted p values (FDR)
+% output = dp_fdr_posthoc_adjust(results_paths{1});
+
+