Add files via upload

SPLS_Toolbox_Dev_2022/bootstrap.prj

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+<deployment-project plugin="plugin.ezdeploy" plugin-version="1.0">
+  <configuration file="/volume/projects/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox_Dev_2022/bootstrap.prj" location="/volume/projects/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox_Dev_2022" name="bootstrap" target="target.ezdeploy.standalone" target-name="Application Compiler">
+    <param.appname>bootstrap</param.appname>
+    <param.icon />
+    <param.icons />
+    <param.version>1.0</param.version>
+    <param.authnamewatermark>David Popovic</param.authnamewatermark>
+    <param.email>david.popovic@med.uni-muenchen.de</param.email>
+    <param.company>KUM</param.company>
+    <param.summary />
+    <param.description />
+    <param.screenshot />
+    <param.guid />
+    <param.installpath.string>/KUM/bootstrap/</param.installpath.string>
+    <param.installpath.combo>option.installpath.user</param.installpath.combo>
+    <param.logo />
+    <param.install.notes />
+    <param.target.install.notes>In the following directions, replace MR/v99 by the directory on the target machine where MATLAB is installed, or MR by the directory where the MATLAB Runtime is installed.
+
+(1) Set the environment variable XAPPLRESDIR to this value:
+
+MR/v99/X11/app-defaults
+
+
+(2) If the environment variable LD_LIBRARY_PATH is undefined, set it to the following:
+
+MR/v99/runtime/glnxa64:MR/v99/bin/glnxa64:MR/v99/sys/os/glnxa64:MR/v99/sys/opengl/lib/glnxa64
+
+If it is defined, set it to the following:
+
+${LD_LIBRARY_PATH}:MR/v99/runtime/glnxa64:MR/v99/bin/glnxa64:MR/v99/sys/os/glnxa64:MR/v99/sys/opengl/lib/glnxa64</param.target.install.notes>
+    <param.intermediate>${PROJECT_ROOT}/bootstrap/for_testing</param.intermediate>
+    <param.files.only>${PROJECT_ROOT}/bootstrap/for_redistribution_files_only</param.files.only>
+    <param.output>${PROJECT_ROOT}/bootstrap/for_redistribution</param.output>
+    <param.logdir>${PROJECT_ROOT}/bootstrap</param.logdir>
+    <param.enable.clean.build>false</param.enable.clean.build>
+    <param.user.defined.mcr.options />
+    <param.target.type>subtarget.standalone</param.target.type>
+    <param.support.packages />
+    <param.web.mcr>true</param.web.mcr>
+    <param.package.mcr>false</param.package.mcr>
+    <param.no.mcr>false</param.no.mcr>
+    <param.web.mcr.name>MyAppInstaller_web</param.web.mcr.name>
+    <param.package.mcr.name>MyAppInstaller_mcr</param.package.mcr.name>
+    <param.no.mcr.name>MyAppInstaller_app</param.no.mcr.name>
+    <param.windows.command.prompt>false</param.windows.command.prompt>
+    <param.create.log>false</param.create.log>
+    <param.log.file />
+    <param.native.matlab>false</param.native.matlab>
+    <param.checkbox>false</param.checkbox>
+    <param.example />
+    <param.help.text>Syntax 
+	 dp_ICV_bootstrap_csv -? 
+	 dp_ICV_bootstrap_csv i analysis_folder 
+ Input Arguments 
+	 -?  print help on how to use the application 
+	 i analysis_folder  input arguments</param.help.text>
+    <unset>
+      <param.icon />
+      <param.icons />
+      <param.version />
+      <param.authnamewatermark />
+      <param.email />
+      <param.company />
+      <param.summary />
+      <param.description />
+      <param.screenshot />
+      <param.guid />
+      <param.installpath.string />
+      <param.installpath.combo />
+      <param.logo />
+      <param.install.notes />
+      <param.intermediate />
+      <param.files.only />
+      <param.output />
+      <param.logdir />
+      <param.enable.clean.build />
+      <param.user.defined.mcr.options />
+      <param.target.type />
+      <param.support.packages />
+      <param.web.mcr />
+      <param.package.mcr />
+      <param.no.mcr />
+      <param.web.mcr.name />
+      <param.package.mcr.name />
+      <param.no.mcr.name />
+      <param.windows.command.prompt />
+      <param.create.log />
+      <param.log.file />
+      <param.native.matlab />
+      <param.checkbox />
+      <param.example />
+    </unset>
+    <fileset.main>
+      <file>/volume/projects/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox/dp_ICV_bootstrap_csv.m</file>
+    </fileset.main>
+    <fileset.resources />
+    <fileset.package />
+    <fileset.depfun>
+      <file>/opt/NM/NeuroMiner_Elessar_1.10_alpha/preproc/nk_PartialCorrelationsObj.m</file>
+      <file>/volume/DP_FEF/ScrFun/ScriptsRepository/ComBat/aprior.m</file>
+      <file>/volume/DP_FEF/ScrFun/ScriptsRepository/ComBat/bprior.m</file>
+      <file>/volume/DP_FEF/ScrFun/ScriptsRepository/ComBat/combat.m</file>
+      <file>/volume/DP_FEF/ScrFun/ScriptsRepository/ComBat/itSol.m</file>
+      <file>/volume/DP_FEF/ScrFun/ScriptsRepository/ComBat/postmean.m</file>
+      <file>/volume/DP_FEF/ScrFun/ScriptsRepository/ComBat/postvar.m</file>
+      <file>/volume/projects/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox/dp_corrections.m</file>
+      <file>/volume/projects/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox/dp_correctscale.m</file>
+      <file>/volume/projects/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox/dp_master_correctscale.m</file>
+      <file>/volume/projects/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox/dp_projection.m</file>
+      <file>/volume/projects/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox/dp_spls.m</file>
+      <file>/volume/projects/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox/dp_spls_full.m</file>
+      <file>/volume/projects/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox/dp_standardize.m</file>
+      <file>/volume/projects/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox/dp_standardize_comb.m</file>
+    </fileset.depfun>
+    <build-deliverables>
+      <file location="${PROJECT_ROOT}/bootstrap/for_testing" name="splash.png" optional="false">/volume/projects/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox_Dev_2022/bootstrap/for_testing/splash.png</file>
+      <file location="${PROJECT_ROOT}/bootstrap/for_testing" name="bootstrap" optional="false">/volume/projects/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox_Dev_2022/bootstrap/for_testing/bootstrap</file>
+      <file location="${PROJECT_ROOT}/bootstrap/for_testing" name="run_bootstrap.sh" optional="false">/volume/projects/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox_Dev_2022/bootstrap/for_testing/run_bootstrap.sh</file>
+      <file location="${PROJECT_ROOT}/bootstrap/for_testing" name="readme.txt" optional="true">/volume/projects/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox_Dev_2022/bootstrap/for_testing/readme.txt</file>
+    </build-deliverables>
+    <workflow />
+    <matlab>
+      <root>/opt/matlab/R2020b</root>
+      <toolboxes>
+        <toolbox name="matlabcoder" />
+        <toolbox name="neuralnetwork" />
+      </toolboxes>
+      <toolbox>
+        <matlabcoder>
+          <enabled>true</enabled>
+        </matlabcoder>
+      </toolbox>
+      <toolbox>
+        <neuralnetwork>
+          <enabled>true</enabled>
+        </neuralnetwork>
+      </toolbox>
+    </matlab>
+    <platform>
+      <unix>true</unix>
+      <mac>false</mac>
+      <windows>false</windows>
+      <win2k>false</win2k>
+      <winxp>false</winxp>
+      <vista>false</vista>
+      <linux>true</linux>
+      <solaris>false</solaris>
+      <osver>3.10.0-1062.18.1.el7.x86_64</osver>
+      <os32>false</os32>
+      <os64>true</os64>
+      <arch>glnxa64</arch>
+      <matlab>true</matlab>
+    </platform>
+  </configuration>
+</deployment-project>

SPLS_Toolbox_Dev_2022/bootstrap/PackagingLog.html

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+<html><meta charset="UTF-8"><pre>
+<font color=blue>mcc -o bootstrap -W main:bootstrap -T link:exe -d /volume/projects/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox_Dev_2022/bootstrap/for_testing -v /volume/projects/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox/dp_ICV_bootstrap_csv.m </font>
+Compiler version: 8.1 (R2020b)
+
+Analyzing file dependencies. 
+
+Parsing file "/volume/projects/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox/dp_ICV_bootstrap_csv.m"
+	(referenced from command line).
+Generating file "/volume/projects/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox_Dev_2022/bootstrap/for_testing/readme.txt".
+Generating file "/volume/projects/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox_Dev_2022/bootstrap/for_testing/run_bootstrap.sh".
+<font color=blue>Packaging...</font>
+Creating the bundle...
+Creating the install agent URL file...
+Web based installer created at /volume/projects/DP_FEF/ScrFun/ScriptsRepository/SPLS_Toolbox_Dev_2022/bootstrap/for_redistribution/MyAppInstaller_web.install.
+Packaging complete.
+Elapsed packaging time was: 19 seconds.
+</pre></html>

SPLS_Toolbox_Dev_2022/bootstrap/for_redistribution_files_only/readme.txt

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+bootstrap Executable
+
+1. Prerequisites for Deployment 
+
+Verify that version 9.9 (R2020b) of the MATLAB Runtime is installed.   
+If not, you can run the MATLAB Runtime installer.
+To find its location, enter
+
+    >>mcrinstaller
+
+at the MATLAB prompt.
+
+Alternatively, download and install the Linux version of the MATLAB Runtime for R2020b 
+from the following link on the MathWorks website:
+
+    https://www.mathworks.com/products/compiler/mcr/index.html
+
+For more information about the MATLAB Runtime and the MATLAB Runtime installer, see 
+"Distribute Applications" in the MATLAB Compiler documentation  
+in the MathWorks Documentation Center.
+
+2. Files to Deploy and Package
+
+Files to Package for Standalone 
+================================
+-bootstrap 
+-run_bootstrap.sh (shell script for temporarily setting environment variables and 
+                   executing the application)
+   -to run the shell script, type
+
+       ./run_bootstrap.sh <mcr_directory> <argument_list>
+
+    at Linux or Mac command prompt. <mcr_directory> is the directory 
+    where version 9.9 of the MATLAB Runtime is installed or the directory where 
+    MATLAB is installed on the machine. <argument_list> is all the 
+    arguments you want to pass to your application. For example, 
+
+    If you have version 9.9 of the MATLAB Runtime installed in 
+    /mathworks/home/application/v99, run the shell script as:
+
+       ./run_bootstrap.sh /mathworks/home/application/v99
+
+    If you have MATLAB installed in /mathworks/devel/application/matlab, 
+    run the shell script as:
+
+       ./run_bootstrap.sh /mathworks/devel/application/matlab
+-MCRInstaller.zip
+    Note: if end users are unable to download the MATLAB Runtime using the
+    instructions in the previous section, include it when building your 
+    component by clicking the "Runtime included in package" link in the
+    Deployment Tool.
+-This readme file 
+
+
+
+3. Definitions
+
+For information on deployment terminology, go to
+https://www.mathworks.com/help and select MATLAB Compiler >
+Getting Started > About Application Deployment >
+Deployment Product Terms in the MathWorks Documentation
+Center.
+
+4. Appendix 
+
+A. Linux systems:
+In the following directions, replace MR/v99 by the directory on the target machine where 
+   MATLAB is installed, or MR by the directory where the MATLAB Runtime is installed.
+
+(1) Set the environment variable XAPPLRESDIR to this value:
+
+MR/v99/X11/app-defaults
+
+
+(2) If the environment variable LD_LIBRARY_PATH is undefined, set it to the following:
+
+MR/v99/runtime/glnxa64:MR/v99/bin/glnxa64:MR/v99/sys/os/glnxa64:MR/v99/sys/opengl/lib/glnxa64
+
+If it is defined, set it to the following:
+
+${LD_LIBRARY_PATH}:MR/v99/runtime/glnxa64:MR/v99/bin/glnxa64:MR/v99/sys/os/glnxa64:MR/v99/sys/opengl/lib/glnxa64
+
+    For more detailed information about setting the MATLAB Runtime paths, see Package and 
+   Distribute in the MATLAB Compiler documentation in the MathWorks Documentation Center.
+
+
+
+        NOTE: To make these changes persistent after logout on Linux 
+              or Mac machines, modify the .cshrc file to include this  
+              setenv command.
+        NOTE: The environment variable syntax utilizes forward 
+              slashes (/), delimited by colons (:).  
+        NOTE: When deploying standalone applications, you can
+              run the shell script file run_bootstrap.sh 
+              instead of setting environment variables. See 
+              section 2 "Files to Deploy and Package".    
+
+
+
+
+
+

SPLS_Toolbox_Dev_2022/bootstrap/for_redistribution_files_only/run_bootstrap.sh

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+#!/bin/sh
+# script for execution of deployed applications
+#
+# Sets up the MATLAB Runtime environment for the current $ARCH and executes 
+# the specified command.
+#
+exe_name=$0
+exe_dir=`dirname "$0"`
+echo "------------------------------------------"
+if [ "x$1" = "x" ]; then
+  echo Usage:
+  echo    $0 \<deployedMCRroot\> args
+else
+  echo Setting up environment variables
+  MCRROOT="$1"
+  echo ---
+  LD_LIBRARY_PATH=.:${MCRROOT}/runtime/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/bin/glnxa64 ;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/os/glnxa64;
+  LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MCRROOT}/sys/opengl/lib/glnxa64;
+  export LD_LIBRARY_PATH;
+  echo LD_LIBRARY_PATH is ${LD_LIBRARY_PATH};
+# Preload glibc_shim in case of RHEL7 variants
+  test -e /usr/bin/ldd &&  ldd --version |  grep -q "(GNU libc) 2\.17"  \
+            && export LD_PRELOAD="${MCRROOT}/bin/glnxa64/glibc-2.17_shim.so"
+  shift 1
+  args=
+  while [ $# -gt 0 ]; do
+      token=$1
+      args="${args} \"${token}\"" 
+      shift
+  done
+  eval "\"${exe_dir}/bootstrap\"" $args
+fi
+exit
+

SPLS_Toolbox_Dev_2022/bootstrap/for_testing/mccExcludedFiles.log

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+The List of Excluded Files
+Excluded files	 Exclusion Message ID	 Reason For Exclusion	 Exclusion Rule