Skip to content

Commit

Permalink
update readme
Browse files Browse the repository at this point in the history
nathalie committed Feb 26, 2024
1 parent d92edcf commit bfa76e0
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion README.md
Original file line number Diff line number Diff line change
@@ -17,7 +17,7 @@ Differential gene expression (DE) analysis between mice treated with a vehicle a

Differential expression networks were calculated with KiMONo and DiffGRN. As a prior for the network analysis, we used [Funcoup](https://funcoup5.scilifelab.se/search/) which includes functional associations between genes and their respective proteins from various evidence types. Scripts that were used to calculate the expression networks on control and DEX treated samples respectively, can be found in the folder [02_CoExp_Kimono](02_CoExp_Kimono/).

During the post-processing of the networks inferred by KiMONo, we filtered out interactions with beta or r-squared values below a certain threshold and inferred a *differential gene expression network* for each brain region in our dataset using the DiffGRN [cite?] approach. Scripts used for the post-processing can be found in the folder [03_CoExp_Analysis](03_CoExp_Analysis/).
During the post-processing of the networks inferred by KiMONo, we filtered out interactions with beta or r-squared values below a certain threshold and inferred a *differential gene expression network* for each brain region in our dataset using the DiffGRN approach. Scripts used for the post-processing can be found in the folder [03_CoExp_Analysis](03_CoExp_Analysis/).

## 2. Manuscript plots

0 comments on commit bfa76e0

Please sign in to comment.