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run_PRScs/example_run.sh

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## Example pipeline execution
# Note: paths can be absolute or relative to the current directory
#!. Setup
bash step1_setup.sh
# 2. run pipeline
## pirol
bash step2_run_pipeline.sh \
pirol \
/nexus/posix0/MPI-psych/g/dept-binder/mpsczamara/AliciaSchowe/GoDMC2/godmc_phase2/input_data_BeCOME/genotypes \
/nexus/posix0/MPI-psych/g/dept-binder/mpsczamara/AliciaSchowe/CovSocial/PRSes/PRScs_pipeline/GWAS_sumstats/formatted/formatted_NEUno23and_18022020.sumstats \
120000 \
output \
NEU \
/nexus/posix0/MPI-psych/g/dept-binder/mpsczamara/AliciaSchowe/tools/genoref/ldblk_1kg_eur \
/nexus/posix0/MPI-psych/g/dept-binder/mpsczamara/AliciaSchowe/tools/miniforge3/etc/profile.d/conda.sh;
## raven
bash step2_run_pipeline.sh \
raven \
/nexus/posix0/MPI-psych/g/dept-binder/mpsczamara/AliciaSchowe/GoDMC2/godmc_phase2/input_data_BeCOME/genotypes \
/nexus/posix0/MPI-psych/g/dept-binder/mpsczamara/AliciaSchowe/CovSocial/PRSes/PRScs_pipeline/GWAS_sumstats/formatted/formatted_NEUno23and_18022020.sumstats \
120000 \
output \
NEU2 \
/nexus/posix0/MPI-psych/g/dept-binder/mpsczamara/AliciaSchowe/tools/genoref/ldblk_1kg_eur \
/nexus/posix0/MPI-psych/g/dept-binder/mpsczamara/AliciaSchowe/tools/miniforge3/etc/profile.d/conda.sh;