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README.md

Important:

CoNekT moved to https://github.com/sepro/CoNekT

We are continuing the development of CoNekT on github.com. By moving to the public version of GitHub users are now able to contribute directly by opening issues and submitting pull requests. Please go to https://github.com/sepro/CoNekT for the latest updates on CoNekT.

The version hosted here matches the manuscript CoNekT: an open-source framework for comparative genomic and transcriptomic network analyses (Proost and Mutwil, NAR 2018).

CoNekT: Coexpression Network Toolkit

conekt logo CoNekT, the Coexpression Network Toolkit, documentation and code.

What is CoNekT ?

CoNekT is an online platform that allows users to browse expression profiles, study expression specificty, co-expression networks and more across different species. A public version including seven plant species which includes thousands of publicly available RNASeq samples (from the SRA) is available here.

Here you can find tutorials how to use the public version along with the source-code and build instructions that allow you to host your own instance with other species or in-house data.

features_overview

Tutorials

Anything missing ? Further questions ? Don't hesitate to contact us.

Setting up CoNekT

Below are the instructions to set up and host your own CoNekT instance.

Optional steps (recommended for production environments)

Acknowledgements

CoNekT is based upon many open-source projects, check the full list here. This work is supported by ERA-CAPS though the EVOREPRO project. The authors would like to thank Andreas Donath for technical support and helpful discussions.

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