config.template.py

"""
Configuration of the website and database.

Copy this file to config.py and change the settings accordingly
"""
import os
import tempfile
basedir = os.path.abspath(os.path.dirname(__file__))

# Flask settings, make sure to turn DEBUG and TESTING to False for production
DEBUG = True
TESTING = True

SECRET_KEY = os.urandom(24)

# Login settings + admin account
LOGIN_ENABLED = True

# Credentials for admin account
# Remove this after creating the database !
# the debug toolbar will show these settings with debug mode enabled
ADMIN_PASSWORD = 'admin'
ADMIN_EMAIL = 'admin@web.com'

# Database settings, database location and path to migration scripts
SQLALCHEMY_DATABASE_URI = 'sqlite:///' + os.path.join(basedir, 'db', 'planet.db')
SQLALCHEMY_MIGRATE_REPO = os.path.join(basedir, 'migration')
SQLALCHEMY_TRACK_MODIFICATIONS = False
SQLALCHEMY_ECHO = DEBUG

# Settings for the FTP/bulk data
PLANET_FTP_DATA = os.path.join(basedir, 'ftp')

# Settings for Cache
CACHE_TYPE = 'simple'
CACHE_DEFAULT_TIMEOUT = 120
CACHE_THRESHOLD = 10000

WTF_CSRF_TIME_LIMIT = None

# Minify pages when debug is off
MINIFY_PAGE = not DEBUG

# Whooshee settings
WHOOSHEE_DIR = tempfile.mkdtemp()
WHOOSHEE_MIN_STRING_LEN = 3
WHOOSHEE_WRITER_TIMEOUT = 2
WHOOSHEE_MEMORY_STORAGE = False
WHOOSHEE_ENABLE_INDEXING = True

# temp dir
TMP_DIR = tempfile.mkdtemp()

# BLAST settings
BLAST_ENABLED = False
BLAST_TMP_DIR = tempfile.mkdtemp()
BLASTP_PATH = ''
BLASTP_DB_PATH = ''
BLASTN_PATH = ''
BLASTN_DB_PATH = ''
BLASTP_CMD = BLASTP_PATH + ' -db ' + BLASTP_DB_PATH + ' -query <IN> -out <OUT> -outfmt 6 -num_threads 1'
BLASTN_CMD = BLASTN_PATH + ' -db ' + BLASTN_DB_PATH + ' -query <IN> -out <OUT> -outfmt 6 -num_threads 1'

MAKEBLASTDB_PATH = ''
MAKEBLASTDB_PROT_CMD = MAKEBLASTDB_PATH + ' -in <IN>' ' -out ' + BLASTP_DB_PATH + ' -dbtype prot'
MAKEBLASTDB_NUCL_CMD = MAKEBLASTDB_PATH + ' -in <IN>' ' -out ' + BLASTN_DB_PATH + ' -dbtype nucl'


# Debug settings
DEBUG_TB_INTERCEPT_REDIRECTS = False

# Front Page Options
# Twitter handle (None to disable twitter feed)
TWITTER_HANDLE = "LabMutwil"
KEYWORD_EXAMPLES = ['AT1G01720', 'GO:0005737', 'Auxin']

# Global message
# This message will be injected on each page !
# Can be used to announce maintenance, ...
GLOB_MSG = None
GLOB_MSG_TITLE = 'Info'

# Tutorial URL
TUTORIAL_URL = "https://github.molgen.mpg.de/proost/CoNekT/blob/master/docs/tutorials/overview.md"

# Customize link to Imprint and Privacy Policy(legal requirement in Germany)
IMPRINT_URL = None
PRIVACY_POLICY_URL = None