Beta Release Cycle

Upcoming releases

Beta 02 - Tomato

To show tomato co-expression networks to AG-Fernie & CRAG (Barcelona) and get feedback on single-species features.

• Complete 'single-species' features
• Tomato in PlaNet2
• Server config (MariaDB not running multi-threaded, apache mod_wsgi not running multi-processed)

From ITs/external sources, we need:

• X
• Y
• Z

Beta 03 - **Publicly ** available data for Chlamy, Arabidopsis, rice, tomato

To get feedback on co-expression networks, expression profiles, querying and comparative features from the EVOREPRO partners.

• Querying for tissue specific genes
• Chlamy in PlaNet2
• Arabidopsis in PlaNet2
• Rice in PlaNet2
• Tomato in PlaNet2
• Analysis that reveals which gene families/Pfam domains are in common between two sets of genes (e.g. rice pollen vs. Ara pollen)
• Analysis that reveals which gene families/Pfam domains are in common between > two sets of genes

From ITs/external sources, we need:

• X
• Y
• Z

Gold 01 - PlaNet2 release

NAR-web server would be ideal

• Public Chlamy
• Spruce
• Arabidopsis
• rice
• maize
• Sorghum data
• Marchantia?
• Public Physco microarray data? It's pretty good; on the other hand, it will be replaced with RNAseq.

From ITs/external sources, we need:

• X
• Y
• Z

Beta 04 - EVOREPRO Rounds 2: Consortium data and evolutionary features

• Complete phylogenetic features (see Roadmap)
• Process Public + EVOREPRO Amborella data (Regensburg)
• Process Public + EVOREPRO Maize data (Regensburg)
• Process EVOREPRO Arabidopsis data (Mark Johnson, Fred Berger)
• Process Public + EVOREPRO Marchantia data ?

From ITs/external sources, we need:

• X
• Y
• Z

Older releases

Beta 01 (done)

For demo and workshop in Oeiras, 4 species (partial data for Maize) and functional annotation pulled from PLAZA.