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Hisat2 support #18

Merged
merged 19 commits into from
Jul 26, 2017
Merged

Hisat2 support #18

merged 19 commits into from
Jul 26, 2017

Commits on Jul 21, 2017

  1. Adding in HISAT2 support

    @proost
    proost committed Jul 21, 2017
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  2. gruntwork to support HISAT2

    @proost
    proost committed Jul 21, 2017
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  3. more gruntwork to support HISAT2

    @proost
    proost committed Jul 21, 2017
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  4. code to run HISAT2 done

    @proost
    proost committed Jul 21, 2017
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  5. code connecting htseq-count to hisat2 done

    @proost
    proost committed Jul 21, 2017
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  6. updated quality control

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    proost committed Jul 21, 2017
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  7. last method updated, still needs to be tested

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    proost committed Jul 21, 2017
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Commits on Jul 24, 2017

  1. new image for workflow (added HISAT2)

    @proost
    proost committed Jul 24, 2017
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Commits on Jul 25, 2017

  1. debugging issue with HISAT2 QC

    @proost
    proost committed Jul 25, 2017
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  2. debugging issue with HISAT2 QC

    @proost
    proost committed Jul 25, 2017
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  3. debugging issue with HISAT2 QC

    @proost
    proost committed Jul 25, 2017
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  4. debugging issue with HISAT2 QC

    @proost
    proost committed Jul 25, 2017
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  5. debugging issue with HISAT2 QC

    @proost
    proost committed Jul 25, 2017
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  6. debugging issue with HISAT2 QC

    @proost
    proost committed Jul 25, 2017
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  7. fixed qc for hisat2

    proost committed Jul 25, 2017
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  8. update docs

    @proost
    proost committed Jul 25, 2017
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  9. update docs

    @proost
    proost committed Jul 25, 2017
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Commits on Jul 26, 2017

  1. Merge remote-tracking branch 'remotes/origin/PBS_Torque_support' into… 

    … hisat2
    @proost
    proost committed Jul 26, 2017
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  2. forcing commit after merge

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    proost committed Jul 26, 2017
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