LSTrAP v1.3

Changelog

• Support for PBS/Torque added
• Support for HISAT2 added
• Helper script to perform PCA added.
• Updated documentation
• Existing users: Some parameters changed their names, update data.ini and config.ini according to the documentation

v1.2.2

changelog

• Better support for modern gff files in parse gff (ID_FIELD not required for lowest level features)

v1.2.1

Fixed small bugs in helper scripts

LSTrAP v1.2

Changelog:

• InterProScan and Orthology disabled by default. Use --enable-interpro and --enable-orthology to run those optional parts of the pipeline
• Included a script to draw the co-expression neighborhood for a specific gene (helper/plot_network.py)
• Included a script to remove splice variants from GFF3 files retaining only the longest transcript
• Added example output to docs
• Added section in docs how to use new scripts

LSTrAP v1.1

Changelog

• You can now pass additional options to qsub for each step.
• --keep-intermediate replaced with --remove-intermediate to avoid accidental deletion of trimmed files, tophat output

First public release of LSTrAP

v1.0

added link to aspera download client