fixes

blast_on_cluster.py

@@ -61,7 +61,7 @@ def execute_command_on_cluster(submission_script, cmd, threads=1):
                 submission_script]
 
     print(qsub_cmd)
-    # subprocess.call(qsub_cmd)
+    subprocess.call(qsub_cmd)
 
 
 def run():
@@ -73,10 +73,12 @@ def run():
 
     print("Waiting for command to execute...")
 
-    for line in sys.stdin():
+    for line in sys.stdin:
         if check_line(line):
             print("\n\tCommand found! Executing")
             execute_command_on_cluster(submission_script, line.strip())
+        else:
+           print(line, end='')
 
 if __name__ == "__main__":
     run()