calculate_annotation.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/calculate_annotation.R
\name{calculate_annotation}
\alias{calculate_annotation}
\title{Calculate HeatmapAnnotation}
\usage{
calculate_annotation(
  df,
  columns,
  bin_colour = c("blueviolet", "chartreuse3"),
  set = "Set1",
  ...
)
}
\arguments{
\item{df}{Data frame}

\item{set}{Character - colour set for code{\link[RColorBrewer]{brewer.pal}}}

\item{...}{further arguments for HeatmapAnnotation}

\item{colums}{Character - column names, multiple are possible}
}
\value{
Returns a named list with colour codes for the HeatmapAnnotation.
}
\description{
This function calculates the colours for code{\link[ComplexHeatmap]{HeatmapAnnotation}}
}
\details{
Be cautios that the colour Palette (set) contains enough colours for the column/factor you are interested in.
}
\examples{
ha <- calculate_annotation(summarized_experiment, "primary_diagnosis", set = "Set1")
}