make_prop_frame.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/z_old_statistic.R
\name{make_prop_frame}
\alias{make_prop_frame}
\title{Make Proportion Table}
\usage{
make_prop_frame(df_list, factor_one, factor_two, limit = NULL)
}
\arguments{
\item{df_list}{A nested list of meta data a single data frame}

\item{factor_one}{First grouping factor for function \link{count_column}}

\item{factor_two}{Second grouping factor for function \link{count_column}}

\item{limit}{Integer or numeric - Range of factor levels or minimum count of factor level| e.g. 1:3 or 50}
}
\value{
Returns a data frame containing all pvalues of the proportion test of all genes.
}
\description{
This function creates a proportion table of two columns in a data frame.
}
\examples{
df_one <- data.frame(case_id = c(1,2,3,4,5,6), group = c("one","one","two","one","two","three"), primary_diagnosis = c("Squamous cell carcinoma, NOS", "Adenocarcinoma, NOS", "Adenocarcinoma with mixed subtypes", "Adenocarcinoma, NOS", "Adenocarcinoma, NOS", "Squamous cell carcinoma, NOS"))
df_two <- data.frame(case_id = c(1,2,3,4,5,6), group = c("one","one","two","one","two","three"), primary_diagnosis = c("Squamous cell carcinoma, NOS", "Squamous cell carcinoma, NOS", "Adenocarcinoma with mixed subtypes", "Squamous cell carcinoma, NOS", "Adenocarcinoma, NOS", "Squamous cell carcinoma, NOS"))
df_list <- list(df_one, df_two)
propDiagnosis <- make_prop_frame(df_list, factor_one = "group", factor_two = "primary_diagnosis")
}