preprocess_assay.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/preprocess_assay.R
\name{preprocess_assay}
\alias{preprocess_assay}
\title{Preprocessing SE Data}
\usage{
preprocess_assay(summarized_experiment, assay_index = 1, verbose = T, ...)
}
\arguments{
\item{summarized_experiment}{SummarizedExperiment Object with gene expression}

\item{assay_index}{Integer - index of assay in SE on which the filtering is applied to}
}
\value{
SummarizedExperiment with probably less genes than before.
}
\description{
This function uses multiple filtering functions on expression data in SE.
}
\examples{
filteredBreastBRCA <- preprocess_assay(breastBRCA, assay_index = 1) #filtering is applied to first assay
}