reorder_all.Rd

% Generated by roxygen2: do not edit by hand
% Please edit documentation in R/preprocess_coldata.R
\name{reorder_all}
\alias{reorder_all}
\title{Uses reorder.column on all eligible columns}
\usage{
reorder_all(summarized_experiment, exception = NULL, unnest = F, threshold = 0)
}
\arguments{
\item{summarized_experiment}{A large list created prior by multimodalR}

\item{exception}{Character - One or more column names that should not be processed by this function}

\item{unnest}{Logical - Unnest data?}

\item{threshold}{Integer - remove >= counts of the factor level}
}
\value{
Returns the data frame with filtered/ordered columns.
}
\description{
This function removes factor levels with less counts than a set value of every column. Additionally, it reorders the factor levels depending on the counts.
}
\examples{
lungMeta <- reorder_all(lungMeta, c("tumor_stage", "race"), 10)
}