a minor spelling error rectified

readFastaSequences.m

@@ -1,4 +1,4 @@
-function [nSeqs, ommittedIndices, passFasta] = readFastaSequences(txt, segmentSizeInBps, givenNSeqs, outputFolder, debugLevel, debugMsgLocation)
+function [nSeqs, omittedIndices, passFasta] = readFastaSequences(txt, segmentSizeInBps, givenNSeqs, outputFolder, debugLevel, debugMsgLocation)
 
 % READFASTASEQUENCES
 % 
@@ -46,11 +46,11 @@
 fasta.legend   = cell(1, givenNSeqs);
 fasta.sequence = cell(1, givenNSeqs);
 i=0;
-ommittedIndices = [];
+omittedIndices = [];
 fasta.title=[txt,',  read: ', date];
 % Read Sequences and their FASTA legends
 fid=fopen(txt,'r');
-ofid=fopen(strcat(outputFolder, '/ommittedFastaIds.txt'), 'a'); 
+ofid=fopen(strcat(outputFolder, '/omittedFastaIds.txt'), 'a'); 
 fprintf(ofid, '----%s---%s----\n\n', fprintf('%s',datetime('now')), txt);
 lengths = [];
 while i < givenNSeqs % feof(fid)==0
@@ -64,7 +64,7 @@
 	    if lengths(end) >= segmentSizeInBps
                 fasta.sequence{i}=[fasta.sequence{i},upper(lineRead)];
 	    else % we omit that sequence
-		ommittedIndices = [ommittedIndices i];
+		omittedIndices = [omittedIndices i];
 		fprintf(ofid, '%d\t%s', i, fasta.legend{i});
 		fprintf(ofid, '\n');
 	    end
@@ -81,7 +81,7 @@
 passFasta = fasta;
 
 if size(ineligibleLengths, 2) > 0
-    logMessages(debugMsgLocation, sprintf('%d sequence(s) have been ommitted as they are shorter than the segment-size specified. Check ommittedFastaIds.txt\n', length(ineligibleIndices)), debugLevel);
+    logMessages(debugMsgLocation, sprintf('%d sequence(s) have been omitted as they are shorter than the segment-size specified. Check omittedFastaIds.txt\n', length(ineligibleIndices)), debugLevel);
     % Change to what would be passed, if it is different than 'fasta' above
     nSeqs = length(find(lengths >= segmentSizeInBps));
     passFasta.sequence = cell(1, nSeqs);