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# Shiny_Fluxer | |
## highlights | |
- loading preferences works again | |
- multiple bar plots all exported in one pdf | |
*you need to update your tidyverse packages* | |
New Shiny Flux tool for 13C tracers | |
## Example files | |
In directory `Input`; an example for the old and the new input format | |
## Input | |
Reads both old and new format | |
- Old format: reads only `BIO` and `MEASUREMENT` sheets | |
- New format: `SAMPLE` and `MEASUREMENT` sheets | |
### SAMPLE (previously BIO) | |
- `SAMPLE_ID` (`BIO_SAMPLE_ID`) | |
- optional columns that will be created with default values if absent: | |
a. `INJECTION\_VOLUME` | |
b. `RUN\_ORDER` | |
- Any number of other columns. They will be used as design factors if | |
a. They do not contain missing values | |
b. They have at least two levels | |
c. They do not only contain unique values | |
### MEASUREMENT | |
Exactly three columns are parsed | |
- `SAMPLE\_ID` | |
- `FEATURE\_ID` | |
- `PEAK\_AREA` | |
### FEATURE\_ID | |
This replaces `COMPOUND\_ID`. The syntax will be described in detail elsewhere. | |
## Processing | |
The IsoCorrectoR package is immediately called to correct for natural abundance 13C. | |
## To do | |
- unify remove variables | |
- pls | |
- hclust | |
## Clean up | |
- is server_init/0002_wipe...R still required?_ | |