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comp-metadata/conda_env/chpv5.yml
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| name: CHPv5 | |
| channels: | |
| - conda-forge | |
| - bioconda | |
| - r | |
| dependencies: | |
| - python=2.7.13 | |
| - sambamba=0.6.6 | |
| - bedtools=2.26.0 | |
| - deeptools=2.5.3 | |
| - macs2=2.1.1.20160309 | |
| - r-base=3.3.2 | |
| - r-rcpp=0.12.8 | |
| - r-devtools=1.13.2 | |
| - r-r.utils | |
| - r-optparse | |
| - bioconductor-genomicranges=1.26.4 | |
| - bioconductor-rsamtools=1.26.1 | |
| # most recent version of histoneHMM 1.7 not available via Bioconda | |
| # Install manually: | |
| # options("unzip"="internal") | |
| # devtools::install_github("matthiasheinig/histoneHMM") |